Analysis of interatomic Contacts of Structural Units in PDB entry:
5F5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F5S entry

There are 2 chains in PDB entry 5F5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0GLN 176
B
 GLU 270ASN 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5F5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 4Right-handed 310
Helix 2
AA2
A
16 21Right-handed 310
Helix 3
AA3
A
22 32Right-handed alpha
Helix 4
AA4
A
32 39Right-handed alpha
Helix 5
AA5
A
43 52Right-handed alpha
Helix 6
AA6
A
68 81Right-handed alpha
Helix 7
AA7
A
83 93Right-handed alpha
Helix 8
AA8
A
96 111Right-handed alpha
Helix 9
AA9
A
112 121Right-handed alpha
Helix 10
AB1
A
122 126Right-handed 310
Helix 11
AB2
A
144 154Right-handed alpha
Helix 12
AB3
A
167 175Right-handed alpha
Helix 13
AB4
B
272 322Right-handed alpha
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There are 3 sheets in PDB entry 5F5S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
129 133parallel
Strand 3
A
139 143anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
66 67anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
160 161anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il