Analysis of interatomic Contacts of Structural Units in PDB entry:
5F8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F8A entry

There are 4 chains in PDB entry 5F8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 A 1 T 12
D
 A 1 T 12
A
 SER 2LYS 245
B
 SER 2LYS 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5F8A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 18Right-handed alpha
Helix 2
AA2
A
36 59Right-handed alpha
Helix 3
AA3
A
124 126Right-handed 310
Helix 4
AA4
A
144 149Right-handed 310
Helix 5
AA5
A
152 159Right-handed 310
Helix 6
AA6
A
173 177Right-handed alpha
Helix 7
AA7
A
195 202Right-handed alpha
Helix 8
AA8
A
208 218Right-handed alpha
Helix 9
AA9
A
222 228Right-handed alpha
Helix 10
AB1
A
232 242Right-handed alpha
Helix 11
AB2
B
3 18Right-handed alpha
Helix 12
AB3
B
36 59Right-handed alpha
Helix 13
AB4
B
124 126Right-handed 310
Helix 14
AB5
B
144 149Right-handed 310
Helix 15
AB6
B
152 159Right-handed 310
Helix 16
AB7
B
173 177Right-handed alpha
Helix 17
AB8
B
195 202Right-handed alpha
Helix 18
AB9
B
208 218Right-handed alpha
Helix 19
AC1
B
222 227Right-handed alpha
Helix 20
AC2
B
232 242Right-handed alpha
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There are 5 sheets in PDB entry 5F8A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
20 25anti-parallel
Strand 3
B
20 25anti-parallel
Strand 4
B
30 32anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
75 79anti-parallel
Strand 3
A
82 96anti-parallel
Strand 4
A
128 140parallel
Strand 5
A
163 172anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 109first strand
Strand 2
A
188 190anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
75 78anti-parallel
Strand 3
B
86 96anti-parallel
Strand 4
B
128 140parallel
Strand 5
B
163 172anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 109first strand
Strand 2
B
188 190anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il