Analysis of interatomic Contacts of Structural Units in PDB entry:
5F9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F9E entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 5F9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 374LEU 675
A
 PHE 677PHE 694
A
 PHE 696HIS 709
B
 LEU 375PHE 694
B
 PHE 696GLY 700
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5F9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
376 378Right-handed 310
Helix 2
AA2
A
413 419Right-handed alpha
Helix 3
AA3
A
421 436Right-handed alpha
Helix 4
AA4
A
466 474Right-handed alpha
Helix 5
AA5
A
477 498Right-handed alpha
Helix 6
AA6
A
506 508Right-handed 310
Helix 7
AA7
A
542 546Right-handed 310
Helix 8
AA8
A
547 552Right-handed alpha
Helix 9
AA9
A
558 575Right-handed alpha
Helix 10
AB1
A
583 594Right-handed alpha
Helix 11
AB2
A
603 614Right-handed alpha
Helix 12
AB3
A
617 621Right-handed 310
Helix 13
AB4
A
627 635Right-handed 310
Helix 14
AB5
A
638 644Right-handed alpha
Helix 15
AB6
A
665 670Right-handed alpha
Helix 16
AB7
A
679 686Right-handed alpha
Helix 17
AB8
A
687 692Right-handed 310
Helix 18
AB9
A
698 708Right-handed alpha
Helix 19
AC1
B
376 380Right-handed 310
Helix 20
AC2
B
413 419Right-handed alpha
Helix 21
AC3
B
421 436Right-handed alpha
Helix 22
AC4
B
465 474Right-handed alpha
Helix 23
AC5
B
477 498Right-handed alpha
Helix 24
AC6
B
506 508Right-handed 310
Helix 25
AC7
B
542 546Right-handed 310
Helix 26
AC8
B
547 552Right-handed alpha
Helix 27
AC9
B
558 575Right-handed alpha
Helix 28
AD1
B
583 594Right-handed alpha
Helix 29
AD2
B
603 614Right-handed alpha
Helix 30
AD3
B
617 621Right-handed 310
Helix 31
AD4
B
627 635Right-handed 310
Helix 32
AD5
B
638 644Right-handed alpha
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There are 4 sheets in PDB entry 5F9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 389first strand
Strand 2
A
392 399anti-parallel
Strand 3
A
405 412anti-parallel
Strand 4
A
453 459anti-parallel
Strand 5
A
444 449anti-parallel
Strand 6
A
696 697anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 465first strand
Strand 2
A
510 512anti-parallel
Strand 3
A
518 520anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 389first strand
Strand 2
B
392 398anti-parallel
Strand 3
B
405 412anti-parallel
Strand 4
B
453 458anti-parallel
Strand 5
B
444 449anti-parallel
Strand 6
B
696 697anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
510 512first strand
Strand 2
B
518 520anti-parallel
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