Analysis of interatomic Contacts of Structural Units in PDB entry:
5F9R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F9R entry

There are 4 chains in PDB entry 5F9R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LYS 3	GLN 1364
A	G 2	U 116
C	C 1	C 30
D	A 12	G 30

There are 63 helices in PDB entry 5F9R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	59	86	Right-handed alpha
Helix 2	AA2	B	86	94	Right-handed alpha
Helix 3	AA3	B	96	103	Right-handed alpha
Helix 4	AA4	B	122	132	Right-handed alpha
Helix 5	AA5	B	134	145	Right-handed alpha
Helix 6	AA6	B	150	164	Right-handed alpha
Helix 7	AA7	B	180	196	Right-handed alpha
Helix 8	AA8	B	217	228	Right-handed alpha
Helix 9	AA9	B	236	246	Right-handed alpha
Helix 10	AB1	B	270	283	Right-handed alpha
Helix 11	AB2	B	287	302	Right-handed alpha
Helix 12	AB3	B	315	343	Right-handed alpha
Helix 13	AB4	B	346	351	Right-handed alpha
Helix 14	AB5	B	358	364	Right-handed alpha
Helix 15	AB6	B	368	382	Right-handed alpha
Helix 16	AB7	B	387	395	Right-handed alpha
Helix 17	AB8	B	404	410	Right-handed 310
Helix 18	AB9	B	411	427	Right-handed alpha
Helix 19	AC1	B	431	436	Right-handed alpha
Helix 20	AC2	B	436	446	Right-handed alpha
Helix 21	AC3	B	477	482	Right-handed alpha
Helix 22	AC4	B	483	494	Right-handed alpha
Helix 23	AC5	B	512	525	Right-handed alpha
Helix 24	AC6	B	541	552	Right-handed alpha
Helix 25	AC7	B	560	568	Right-handed alpha
Helix 26	AC8	B	591	601	Right-handed alpha
Helix 27	AC9	B	603	609	Right-handed alpha
Helix 28	AD1	B	612	626	Right-handed alpha
Helix 29	AD2	B	628	636	Right-handed alpha
Helix 30	AD3	B	637	640	Right-handed 310
Helix 31	AD4	B	644	654	Right-handed alpha
Helix 32	AD5	B	663	669	Right-handed alpha
Helix 33	AD6	B	678	685	Right-handed alpha
Helix 34	AD7	B	692	698	Right-handed alpha
Helix 35	AD8	B	703	709	Right-handed alpha
Helix 36	AD9	B	723	727	Right-handed 310
Helix 37	AE1	B	730	751	Right-handed alpha
Helix 38	AE2	B	769	777	Right-handed alpha
Helix 39	AE3	B	779	792	Right-handed alpha
Helix 40	AE4	B	794	799	Right-handed alpha
Helix 41	AE5	B	802	807	Right-handed alpha
Helix 42	AE6	B	808	817	Right-handed alpha
Helix 43	AE7	B	860	865	Right-handed 310
Helix 44	AE8	B	872	889	Right-handed alpha
Helix 45	AE9	B	893	901	Right-handed alpha
Helix 46	AF1	B	901	906	Right-handed alpha
Helix 47	AF2	B	917	939	Right-handed alpha
Helix 48	AF3	B	960	969	Right-handed alpha
Helix 49	AF4	B	980	1001	Right-handed alpha
Helix 50	AF5	B	1004	1008	Right-handed 310
Helix 51	AF6	B	1031	1044	Right-handed alpha
Helix 52	AF7	B	1045	1047	Right-handed 310
Helix 53	AF8	B	1078	1088	Right-handed alpha
Helix 54	AF9	B	1168	1177	Right-handed alpha
Helix 55	AG1	B	1177	1186	Right-handed alpha
Helix 56	AG2	B	1191	1195	Right-handed 310
Helix 57	AG3	B	1229	1241	Right-handed alpha
Helix 58	AG4	B	1248	1262	Right-handed alpha
Helix 59	AG5	B	1264	1280	Right-handed alpha
Helix 60	AG6	B	1284	1297	Right-handed alpha
Helix 61	AG7	B	1301	1313	Right-handed alpha
Helix 62	AG8	B	1314	1317	Right-handed 310
Helix 63	AG9	B	1340	1344	Right-handed 310

There are 9 sheets in PDB entry 5F9R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	954	959	first strand
Strand 2	B	758	763	parallel
Strand 3	B	6	12	parallel
Strand 4	B	15	21	anti-parallel
Strand 5	B	48	52	anti-parallel
Strand 6	B	1093	1096	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	33	first strand
Strand 2	B	42	46	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	1358	1361	parallel
Strand 3	B	1346	1349	anti-parallel
Strand 4	B	1202	1205	anti-parallel
Strand 5	B	1211	1214	anti-parallel
Strand 6	B	1220	1222	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	539	first strand
Strand 2	B	528	529	anti-parallel
Strand 3	B	580	581	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	837	840	first strand
Strand 2	B	855	858	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1049	1051	first strand
Strand 2	B	1057	1059	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1106	1107	first strand
Strand 2	B	1135	1137	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1158	1167	first strand
Strand 2	B	1139	1149	anti-parallel
Strand 3	B	1196	1198	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1324	1325	first strand
Strand 2	B	1330	1331	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F9R

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F9R