Analysis of interatomic Contacts of Structural Units in PDB entry:
5FB0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FB0 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 5FB0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 695THR 877
D
ALA 1ARG 2
D
LYS 4SER 10
C
SER 695GLU 876
F
ALA 1ARG 2
F
LYS 4SER 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5FB0. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
742 752Right-handed alpha
Helix 2
AA2
A
762 768Right-handed alpha
Helix 3
AA3
A
772 788Right-handed alpha
Helix 4
AA4
A
789 796Right-handed 310
Helix 5
AA5
A
814 824Right-handed alpha
Helix 6
AA6
A
829 848Right-handed alpha
Helix 7
AA7
A
850 872Right-handed alpha
Helix 8
AA8
C
742 754Right-handed alpha
Helix 9
AA9
C
762 769Right-handed alpha
Helix 10
AB1
C
772 788Right-handed alpha
Helix 11
AB2
C
789 796Right-handed 310
Helix 12
AB3
C
814 824Right-handed alpha
Helix 13
AB4
C
829 848Right-handed alpha
Helix 14
AB5
C
850 873Right-handed alpha
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There are 2 sheets in PDB entry 5FB0. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
723 725first strand
Strand 2
A
712 716anti-parallel
Strand 3
D
2 6anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
723 725first strand
Strand 2
C
712 716anti-parallel
Strand 3
F
2 6anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il