Analysis of interatomic Contacts of Structural Units in PDB entry:
5FDK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FDK entry

There are 8 chains in PDB entry 5FDK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 23SER 199
B
THR 34SER 199
C
PRO 26SER 199
D
MET 1SER 199
E
A 1 T 12
F
A 1 T 12
G
C 2 T 12
H
A 1 G 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5FDK. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
35 48Right-handed alpha
Helix 2
AA2
A
114 116Right-handed 310
Helix 3
AA3
A
117 130Right-handed alpha
Helix 4
AA4
A
149 162Right-handed alpha
Helix 5
AA5
A
169 176Right-handed alpha
Helix 6
AA6
A
189 198Right-handed alpha
Helix 7
AA7
B
35 49Right-handed alpha
Helix 8
AA8
B
117 130Right-handed alpha
Helix 9
AA9
B
149 161Right-handed alpha
Helix 10
AB1
B
169 176Right-handed alpha
Helix 11
AB2
B
188 199Right-handed alpha
Helix 12
AB3
C
35 49Right-handed alpha
Helix 13
AB4
C
114 116Right-handed 310
Helix 14
AB5
C
117 129Right-handed alpha
Helix 15
AB6
C
148 161Right-handed alpha
Helix 16
AB7
C
171 176Right-handed alpha
Helix 17
AB8
C
189 197Right-handed alpha
Helix 18
AB9
D
35 49Right-handed alpha
Helix 19
AC1
D
112 116Right-handed 310
Helix 20
AC2
D
117 130Right-handed alpha
Helix 21
AC3
D
149 159Right-handed alpha
Helix 22
AC4
D
168 176Right-handed alpha
Helix 23
AC5
D
188 198Right-handed alpha
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There are 14 sheets in PDB entry 5FDK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
53 56first strand
Strand 2
A
89 93anti-parallel
Strand 3
A
96 104anti-parallel
Strand 4
A
133 139parallel
Strand 5
A
144 148anti-parallel
Strand 6
A
177 178anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
61 65first strand
Strand 2
A
78 81anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
110 112first strand
Strand 2
A
166 168anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
53 56first strand
Strand 2
B
89 93anti-parallel
Strand 3
B
96 99anti-parallel
Strand 4
B
133 140parallel
Strand 5
B
102 104parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
53 56first strand
Strand 2
B
89 93anti-parallel
Strand 3
B
96 99anti-parallel
Strand 4
B
133 140parallel
Strand 5
B
143 148anti-parallel
Strand 6
B
177 178anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
63 66first strand
Strand 2
B
75 79anti-parallel
Strand 3
D
75 81anti-parallel
Strand 4
D
61 67anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
110 112first strand
Strand 2
B
166 168anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
53 54first strand
Strand 2
C
89 93anti-parallel
Strand 3
C
96 100anti-parallel
Strand 4
C
133 134parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
61 67first strand
Strand 2
C
75 81anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
102 103first strand
Strand 2
C
137 138parallel
Strand 3
C
145 146anti-parallel
Strand 4
C
177 178anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
110 112first strand
Strand 2
C
166 168anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
180 181first strand
Strand 2
C
187 188anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
53 56first strand
Strand 2
D
89 93anti-parallel
Strand 3
D
96 99anti-parallel
Strand 4
D
133 138parallel
Strand 5
D
102 103parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
53 56first strand
Strand 2
D
89 93anti-parallel
Strand 3
D
96 99anti-parallel
Strand 4
D
133 138parallel
Strand 5
D
145 148anti-parallel
Strand 6
D
177 178anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il