Analysis of interatomic Contacts of Structural Units in PDB entry:
5FIW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FIW entry

There are 6 chains in PDB entry 5FIW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 1ALA 105
B
 CYS 1PRO 103
C
 ASN 114SER 149
C
 PRO 151GLU 577
D
 ASN 114SER 149
D
 PRO 151GLU 577
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 5FIW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 69Right-handed alpha
Helix 2
2
A
72 76Right-handed 310
Helix 3
3
A
84 98Right-handed alpha
Helix 4
4
B
60 69Right-handed alpha
Helix 5
5
B
72 76Right-handed 310
Helix 6
6
B
84 98Right-handed alpha
Helix 7
7
C
173 178Right-handed alpha
Helix 8
8
C
180 187Right-handed alpha
Helix 9
9
C
219 224Right-handed alpha
Helix 10
10
C
243 268Right-handed alpha
Helix 11
11
C
272 295Right-handed alpha
Helix 12
12
C
296 302Right-handed alpha
Helix 13
13
C
302 310Right-handed alpha
Helix 14
14
C
327 332Right-handed alpha
Helix 15
15
C
333 339Right-handed 310
Helix 16
16
C
362 364Right-handed 310
Helix 17
17
C
367 374Right-handed alpha
Helix 18
18
C
377 386Right-handed alpha
Helix 19
19
C
399 404Right-handed alpha
Helix 20
20
C
416 428Right-handed alpha
Helix 21
21
C
432 440Right-handed alpha
Helix 22
22
C
447 456Right-handed alpha
Helix 23
23
C
457 469Right-handed alpha
Helix 24
24
C
470 474Right-handed 310
Helix 25
25
C
475 483Right-handed alpha
Helix 26
26
C
492 509Right-handed alpha
Helix 27
27
C
521 529Right-handed alpha
Helix 28
28
C
532 541Right-handed alpha
Helix 29
29
C
565 567Right-handed 310
Helix 30
30
C
572 576Right-handed 310
Helix 31
31
D
173 178Right-handed alpha
Helix 32
32
D
180 187Right-handed alpha
Helix 33
33
D
219 225Right-handed alpha
Helix 34
34
D
243 268Right-handed alpha
Helix 35
35
D
272 295Right-handed alpha
Helix 36
36
D
296 302Right-handed alpha
Helix 37
37
D
302 310Right-handed alpha
Helix 38
38
D
325 332Right-handed alpha
Helix 39
39
D
333 339Right-handed 310
Helix 40
40
D
362 364Right-handed 310
Helix 41
41
D
367 374Right-handed alpha
Helix 42
42
D
377 386Right-handed alpha
Helix 43
43
D
399 404Right-handed alpha
Helix 44
44
D
416 428Right-handed alpha
Helix 45
45
D
432 440Right-handed alpha
Helix 46
46
D
447 456Right-handed alpha
Helix 47
47
D
457 469Right-handed alpha
Helix 48
48
D
470 474Right-handed 310
Helix 49
49
D
475 483Right-handed alpha
Helix 50
50
D
492 509Right-handed alpha
Helix 51
51
D
521 529Right-handed alpha
Helix 52
52
D
532 541Right-handed alpha
Helix 53
53
D
565 567Right-handed 310
Helix 54
54
D
572 576Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 5FIW. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
C
164 165anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
C
388 390anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
D
164 165anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 83first strand
Strand 2
D
388 390anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
342 344first strand
Strand 2
C
358 360anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
545 547first strand
Strand 2
C
561 563anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
342 344first strand
Strand 2
D
358 360anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
545 547first strand
Strand 2
D
561 563anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il