Analysis of interatomic Contacts of Structural Units in PDB entry:
5FJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FJV entry

There are 5 chains in PDB entry 5FJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 34HIS 240
B
GLU 33HIS 240
C
GLU 33HIS 240
D
GLU 33HIS 240
E
GLU 33HIS 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5FJV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
34 44Right-handed alpha
Helix 2
2
A
92 95Right-handed 310
Helix 3
3
B
34 40Right-handed alpha
Helix 4
4
B
92 95Right-handed 310
Helix 5
5
B
97 101Right-handed 310
Helix 6
6
C
34 44Right-handed alpha
Helix 7
7
C
92 95Right-handed 310
Helix 8
8
C
97 101Right-handed 310
Helix 9
9
D
36 44Right-handed alpha
Helix 10
10
D
92 95Right-handed 310
Helix 11
11
D
97 101Right-handed 310
Helix 12
12
E
34 44Right-handed alpha
Helix 13
13
E
92 95Right-handed 310
Helix 14
14
E
97 101Right-handed 310
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There are 22 sheets in PDB entry 5FJV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, A, DB, C, DD, EA, EB, EC, ED,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
106 110first strand
Strand 2
A
136 140anti-parallel
Strand 3
A
144 147anti-parallel
Strand 4
A
78 90anti-parallel
Strand 5
A
150 156anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
106 110first strand
Strand 2
A
136 140anti-parallel
Strand 3
A
144 147anti-parallel
Strand 4
A
78 90anti-parallel
Strand 5
A
58 73anti-parallel
Strand 6
A
185 189parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
150 156first strand
Strand 2
A
78 90anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
119 121first strand
Strand 2
A
172 177anti-parallel
Strand 3
A
222 232anti-parallel
Strand 4
A
211 219anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
159 160first strand
Strand 2
A
168 169anti-parallel
Strand 3
A
235 236anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
106 109first strand
Strand 2
B
137 140anti-parallel
Strand 3
B
144 147anti-parallel
Strand 4
B
79 90anti-parallel
Strand 5
B
150 155anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
106 109first strand
Strand 2
B
137 140anti-parallel
Strand 3
B
144 147anti-parallel
Strand 4
B
79 90anti-parallel
Strand 5
B
58 72anti-parallel
Strand 6
B
185 189parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
150 155first strand
Strand 2
B
79 90anti-parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
120 121first strand
Strand 2
B
170 176anti-parallel
Strand 3
B
228 234anti-parallel
Strand 4
B
209 215anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
218 219first strand
Strand 2
B
222 225anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
108 110first strand
Strand 2
C
136 139anti-parallel
Strand 3
C
144 147anti-parallel
Strand 4
C
78 90anti-parallel
Strand 5
C
150 156anti-parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
108 110first strand
Strand 2
C
136 139anti-parallel
Strand 3
C
144 147anti-parallel
Strand 4
C
78 90anti-parallel
Strand 5
C
58 73anti-parallel
Strand 6
C
185 189parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
150 156first strand
Strand 2
C
78 90anti-parallel
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There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
119 121first strand
Strand 2
C
168 177anti-parallel
Strand 3
C
222 236anti-parallel
Strand 4
C
210 219anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
107 109first strand
Strand 2
D
137 139anti-parallel
Strand 3
D
144 147anti-parallel
Strand 4
D
78 90anti-parallel
Strand 5
D
150 156anti-parallel
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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
107 109first strand
Strand 2
D
137 139anti-parallel
Strand 3
D
144 147anti-parallel
Strand 4
D
78 90anti-parallel
Strand 5
D
58 72anti-parallel
Strand 6
D
185 189parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
150 156first strand
Strand 2
D
78 90anti-parallel
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There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
119 121first strand
Strand 2
D
172 177anti-parallel
Strand 3
D
222 233anti-parallel
Strand 4
D
210 219anti-parallel
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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
106 109first strand
Strand 2
E
137 140anti-parallel
Strand 3
E
144 147anti-parallel
Strand 4
E
78 90anti-parallel
Strand 5
E
150 156anti-parallel
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There are 6 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
106 109first strand
Strand 2
E
137 140anti-parallel
Strand 3
E
144 147anti-parallel
Strand 4
E
78 90anti-parallel
Strand 5
E
58 73anti-parallel
Strand 6
E
185 189parallel
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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
150 156first strand
Strand 2
E
78 90anti-parallel
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There are 4 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
119 121first strand
Strand 2
E
172 177anti-parallel
Strand 3
E
222 232anti-parallel
Strand 4
E
211 219anti-parallel
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