Analysis of interatomic Contacts of Structural Units in PDB entry:
5FMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FMH entry

There is 1 chain in PDB entry 5FMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 128ASP 613
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 5FMH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
140 154Right-handed alpha
Helix 2
2
A
172 176Right-handed 310
Helix 3
3
A
177 182Right-handed alpha
Helix 4
4
A
186 191Right-handed alpha
Helix 5
5
A
207 211Right-handed 310
Helix 6
6
A
267 273Right-handed alpha
Helix 7
7
A
274 279Right-handed alpha
Helix 8
8
A
286 300Right-handed alpha
Helix 9
9
A
309 327Right-handed alpha
Helix 10
10
A
345 359Right-handed alpha
Helix 11
11
A
406 411Right-handed alpha
Helix 12
12
A
454 470Right-handed alpha
Helix 13
13
A
516 525Right-handed alpha
Helix 14
14
A
528 534Right-handed alpha
Helix 15
15
A
584 595Right-handed alpha
Helix 16
16
A
600 610Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5FMH. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
224 228first strand
Strand 2
A
158 162parallel
Strand 3
A
131 137parallel
Strand 4
A
250 258parallel
Strand 5
A
433 435parallel
Strand 6
A
428 430anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
224 228first strand
Strand 2
A
158 162parallel
Strand 3
A
131 137parallel
Strand 4
A
250 258parallel
Strand 5
A
242 245anti-parallel
Strand 6
A
233 237parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
192 194first strand
Strand 2
A
200 202anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
262 264first strand
Strand 2
A
400 402anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
281 283first strand
Strand 2
A
393 396parallel
Strand 3
A
302 306parallel
Strand 4
A
329 333parallel
Strand 5
A
362 364parallel
Back to list of sheets
Back to top of page

There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
369 375first strand
Strand 2
A
378 383anti-parallel
Strand 3
A
388 391anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
421 422first strand
Strand 2
A
440 444parallel
Strand 3
A
448 450anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
481 485first strand
Strand 2
A
491 496anti-parallel
Strand 3
A
572 579anti-parallel
Strand 4
A
562 569anti-parallel
Strand 5
A
504 509anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il