Analysis of interatomic Contacts of Structural Units in PDB entry:
5FN4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FN4 entry

There are 5 chains in PDB entry 5FN4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 34PHE 698
B
 GLY 78ILE 467
C
 GLY 2LEU 244
D
 ASN 2PRO 101
G
 ALA -1ALA 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5FN4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 40Right-handed alpha
Helix 2
2
A
78 87Right-handed alpha
Helix 3
3
A
105 113Right-handed alpha
Helix 4
4
A
185 200Right-handed alpha
Helix 5
5
A
226 240Right-handed alpha
Helix 6
6
A
298 315Right-handed alpha
Helix 7
7
A
339 350Right-handed alpha
Helix 8
8
A
381 387Right-handed alpha
Helix 9
9
A
387 407Right-handed alpha
Helix 10
10
A
425 431Right-handed alpha
Helix 11
11
A
459 464Right-handed alpha
Helix 12
12
A
474 478Right-handed 310
Helix 13
13
A
481 502Right-handed alpha
Helix 14
14
A
514 527Right-handed alpha
Helix 15
15
A
534 538Right-handed 310
Helix 16
16
A
561 576Right-handed alpha
Helix 17
17
A
582 588Right-handed alpha
Helix 18
18
A
596 600Right-handed 310
Helix 19
19
A
632 637Right-handed alpha
Helix 20
20
A
665 693Right-handed alpha
Helix 21
21
A
693 698Right-handed alpha
Helix 22
22
B
78 104Right-handed alpha
Helix 23
23
B
167 190Right-handed alpha
Helix 24
24
B
195 214Right-handed alpha
Helix 25
25
B
219 241Right-handed alpha
Helix 26
26
B
242 262Right-handed alpha
Helix 27
27
B
382 399Right-handed alpha
Helix 28
28
B
403 428Right-handed alpha
Helix 29
29
B
435 452Right-handed alpha
Helix 30
30
B
452 464Right-handed alpha
Helix 31
31
C
2 25Right-handed alpha
Helix 32
32
C
28 61Right-handed alpha
Helix 33
33
C
64 100Right-handed alpha
Helix 34
34
C
113 142Right-handed alpha
Helix 35
35
C
155 185Right-handed alpha
Helix 36
36
C
186 206Right-handed alpha
Helix 37
37
C
209 212Right-handed 310
Helix 38
38
C
213 232Right-handed alpha
Helix 39
39
C
235 243Right-handed alpha
Helix 40
40
D
2 6Right-handed 310
Helix 41
41
D
7 23Right-handed alpha
Helix 42
42
D
26 43Right-handed alpha
Helix 43
43
D
49 85Right-handed alpha
Helix 44
44
D
86 92Right-handed alpha
Helix 45
45
G
-1 23Right-handed alpha
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There are 6 sheets in PDB entry 5FN4. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
657 662anti-parallel
Strand 3
A
213 218anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
53 54anti-parallel
Strand 3
A
649 650anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
94 99parallel
Strand 3
A
121 124parallel
Strand 4
A
180 183parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 379first strand
Strand 2
A
437 442anti-parallel
Strand 3
A
361 365parallel
Strand 4
A
275 278parallel
Strand 5
A
324 329parallel
Strand 6
A
254 257anti-parallel
Strand 7
A
626 629anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
577 579first strand
Strand 2
A
619 622anti-parallel
Strand 3
A
603 605anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 194first strand
Strand 2
D
93 95anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il