Analysis of interatomic Contacts of Structural Units in PDB entry:
5FQ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FQ2 entry

There are 4 chains in PDB entry 5FQ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ILE 109
A
 GLN 111SER 158
B
 LYS 447LYS 504
B
 LEU 506VAL 547
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5FQ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 19Right-handed alpha
Helix 2
2
A
94 98Right-handed 310
Helix 3
3
A
108 122Right-handed alpha
Helix 4
4
A
130 140Right-handed alpha
Helix 5
5
A
140 155Right-handed alpha
Helix 6
6
B
460 467Right-handed alpha
Helix 7
7
B
468 473Right-handed alpha
Helix 8
8
B
498 502Right-handed 310
Helix 9
9
B
506 510Right-handed 310
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There are 3 sheets in PDB entry 5FQ2. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 30first strand
Strand 2
A
36 46anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
57 63anti-parallel
Strand 3
A
36 46parallel
Strand 4
B
488 491anti-parallel
Strand 5
B
478 482anti-parallel
Strand 6
B
516 521anti-parallel
Strand 7
B
527 534anti-parallel
Strand 8
B
449 454parallel
Strand 9
B
544 546anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
57 63anti-parallel
Strand 3
A
36 46parallel
Strand 4
A
25 30anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il