Analysis of interatomic Contacts of Structural Units in PDB entry:
5FQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FQD entry

There are 3 chains in PDB entry 5FQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1HIS 1140
B
ILE 47ASP 436
C
GLU 10MET 110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 5FQD. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
250 254Right-handed 310
Helix 2
2
A
381 384Right-handed 310
Helix 3
3
A
987 990Right-handed 310
Helix 4
4
A
1044 1062Right-handed alpha
Helix 5
5
A
1069 1075Right-handed alpha
Helix 6
6
A
1091 1096Right-handed alpha
Helix 7
7
A
1097 1100Right-handed 310
Helix 8
8
A
1101 1109Right-handed alpha
Helix 9
9
A
1125 1138Right-handed alpha
Helix 10
10
B
53 57Right-handed 310
Helix 11
11
B
57 61Right-handed 310
Helix 12
12
B
103 116Right-handed alpha
Helix 13
13
B
194 198Right-handed 310
Helix 14
14
B
199 206Right-handed 310
Helix 15
15
B
219 232Right-handed alpha
Helix 16
16
B
233 238Right-handed 310
Helix 17
17
B
241 247Right-handed alpha
Helix 18
18
B
249 263Right-handed alpha
Helix 19
19
B
268 273Right-handed alpha
Helix 20
20
B
276 287Right-handed alpha
Helix 21
21
B
291 300Right-handed alpha
Helix 22
22
B
303 318Right-handed alpha
Helix 23
23
C
56 68Right-handed alpha
Helix 24
24
C
96 104Right-handed alpha
Helix 25
25
C
109 130Right-handed alpha
Helix 26
26
C
138 140Right-handed 310
Helix 27
27
C
146 150Right-handed 310
Helix 28
28
C
189 194Right-handed alpha
Helix 29
29
C
199 216Right-handed alpha
Helix 30
30
C
228 243Right-handed alpha
Helix 31
31
C
244 249Right-handed alpha
Helix 32
32
C
253 265Right-handed alpha
Helix 33
33
C
273 288Right-handed alpha
Helix 34
34
C
296 302Right-handed alpha
Helix 35
35
D
250 254Right-handed 310
Helix 36
36
D
381 384Right-handed 310
Helix 37
37
D
1044 1062Right-handed alpha
Helix 38
38
D
1069 1075Right-handed alpha
Helix 39
39
D
1091 1096Right-handed alpha
Helix 40
40
D
1097 1100Right-handed 310
Helix 41
41
D
1101 1109Right-handed alpha
Helix 42
42
D
1125 1138Right-handed alpha
Helix 43
43
E
57 61Right-handed 310
Helix 44
44
E
103 116Right-handed alpha
Helix 45
45
E
199 206Right-handed 310
Helix 46
46
E
219 232Right-handed alpha
Helix 47
47
E
233 238Right-handed 310
Helix 48
48
E
241 247Right-handed alpha
Helix 49
49
E
249 263Right-handed alpha
Helix 50
50
E
276 287Right-handed alpha
Helix 51
51
E
291 300Right-handed alpha
Helix 52
52
E
303 318Right-handed alpha
Helix 53
53
F
56 68Right-handed alpha
Helix 54
54
F
96 104Right-handed alpha
Helix 55
55
F
109 130Right-handed alpha
Helix 56
56
F
138 140Right-handed 310
Helix 57
57
F
146 150Right-handed 310
Helix 58
58
F
189 195Right-handed alpha
Helix 59
59
F
199 216Right-handed alpha
Helix 60
60
F
228 243Right-handed alpha
Helix 61
61
F
244 249Right-handed alpha
Helix 62
62
F
253 266Right-handed alpha
Helix 63
63
F
273 288Right-handed alpha
Helix 64
64
F
296 302Right-handed alpha
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There are 60 sheets in PDB entry 5FQD. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, BA, BB, BC, BD, BE, BF, BG, CA, CB, CC, A, DB, C, DD, DE, DF, G, DH, DI, DJ, DK, DL, DM, DN, DO, DP, DQ, DR, DS, T, EA, EB, EC, ED, EE, EF, EG, FA, FB, FC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1004 1009first strand
Strand 2
A
1025 1032anti-parallel
Strand 3
A
1037 1042anti-parallel
Strand 4
A
4 10anti-parallel
Strand 5
A
1088 1090parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
17 21first strand
Strand 2
A
30 35anti-parallel
Strand 3
A
38 44anti-parallel
Strand 4
A
49 56anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
61 67first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
85 94anti-parallel
Strand 4
A
97 107anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
121 124first strand
Strand 2
A
130 134anti-parallel
Strand 3
A
139 144anti-parallel
Strand 4
A
155 158anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
163 169first strand
Strand 2
A
177 184anti-parallel
Strand 3
A
187 196anti-parallel
Strand 4
A
201 204parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
163 169first strand
Strand 2
A
177 184anti-parallel
Strand 3
A
187 196anti-parallel
Strand 4
A
210 211anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
201 204first strand
Strand 2
A
187 196parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
218 221first strand
Strand 2
A
229 232anti-parallel
Strand 3
A
237 240anti-parallel
Strand 4
A
245 248anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
258 263first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
279 286anti-parallel
Strand 4
A
299 307anti-parallel
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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
311 318first strand
Strand 2
A
321 326anti-parallel
Strand 3
A
331 336anti-parallel
Strand 4
A
347 353anti-parallel
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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
359 365first strand
Strand 2
A
374 379anti-parallel
Strand 3
A
386 392anti-parallel
Strand 4
A
710 716anti-parallel
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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
720 727first strand
Strand 2
A
732 743anti-parallel
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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
749 751first strand
Strand 2
A
732 743parallel
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There are 5 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
762 765first strand
Strand 2
A
801 806parallel
Strand 3
A
785 795anti-parallel
Strand 4
A
732 743anti-parallel
Strand 5
A
749 751parallel
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There are 5 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
762 765first strand
Strand 2
A
801 806parallel
Strand 3
A
785 795anti-parallel
Strand 4
A
732 743anti-parallel
Strand 5
A
720 727anti-parallel
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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
811 819first strand
Strand 2
A
828 835anti-parallel
Strand 3
A
846 854anti-parallel
Strand 4
A
857 866anti-parallel
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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
870 876first strand
Strand 2
A
879 884anti-parallel
Strand 3
A
887 893anti-parallel
Strand 4
A
899 906anti-parallel
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There are 4 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
913 917first strand
Strand 2
A
920 924anti-parallel
Strand 3
A
929 935anti-parallel
Strand 4
A
942 949anti-parallel
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There are 4 strands in AS sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
954 959first strand
Strand 2
A
964 969anti-parallel
Strand 3
A
973 978anti-parallel
Strand 4
A
993 999anti-parallel
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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1076 1077first strand
Strand 2
A
1082 1083anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
65 66first strand
Strand 2
B
132 149parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
78 82first strand
Strand 2
B
178 184anti-parallel
Strand 3
B
152 172anti-parallel
Strand 4
B
132 149anti-parallel
Strand 5
B
119 127anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
78 82first strand
Strand 2
B
178 184anti-parallel
Strand 3
B
152 172anti-parallel
Strand 4
B
96 101anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
119 127first strand
Strand 2
B
132 149anti-parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
78 82first strand
Strand 2
B
178 184anti-parallel
Strand 3
B
152 172anti-parallel
Strand 4
B
132 149anti-parallel
Strand 5
B
65 66parallel
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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
330 333first strand
Strand 2
B
320 323anti-parallel
Strand 3
B
422 425anti-parallel
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There are 6 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
346 350first strand
Strand 2
B
356 362anti-parallel
Strand 3
B
413 418anti-parallel
Strand 4
B
397 404anti-parallel
Strand 5
B
384 391anti-parallel
Strand 6
B
368 375anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
12 13first strand
Strand 2
C
17 24anti-parallel
Strand 3
C
29 36anti-parallel
Strand 4
C
42 49anti-parallel
Strand 5
C
85 91anti-parallel
Strand 6
C
76 82anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
132 133first strand
Strand 2
C
162 163anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
142 144first strand
Strand 2
C
153 155anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1004 1009first strand
Strand 2
D
1025 1032anti-parallel
Strand 3
D
1037 1042anti-parallel
Strand 4
D
4 10anti-parallel
Strand 5
D
1088 1090parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
17 21first strand
Strand 2
D
30 35anti-parallel
Strand 3
D
38 44anti-parallel
Strand 4
D
49 56anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
61 67first strand
Strand 2
D
76 81anti-parallel
Strand 3
D
85 94anti-parallel
Strand 4
D
97 107anti-parallel
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There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
121 124first strand
Strand 2
D
130 134anti-parallel
Strand 3
D
139 144anti-parallel
Strand 4
D
155 158anti-parallel
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There are 4 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
163 169first strand
Strand 2
D
177 184anti-parallel
Strand 3
D
187 196anti-parallel
Strand 4
D
201 204parallel
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There are 4 strands in DF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
163 169first strand
Strand 2
D
177 184anti-parallel
Strand 3
D
187 196anti-parallel
Strand 4
D
210 211anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
201 204first strand
Strand 2
D
187 196parallel
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There are 4 strands in DH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
218 221first strand
Strand 2
D
229 232anti-parallel
Strand 3
D
237 241anti-parallel
Strand 4
D
244 248anti-parallel
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There are 4 strands in DI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
258 263first strand
Strand 2
D
270 275anti-parallel
Strand 3
D
279 289anti-parallel
Strand 4
D
295 307anti-parallel
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There are 4 strands in DJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
313 318first strand
Strand 2
D
321 325anti-parallel
Strand 3
D
331 336anti-parallel
Strand 4
D
347 353anti-parallel
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There are 4 strands in DK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
359 365first strand
Strand 2
D
374 379anti-parallel
Strand 3
D
386 392anti-parallel
Strand 4
D
710 716anti-parallel
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There are 2 strands in DL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
720 727first strand
Strand 2
D
732 743anti-parallel
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There are 2 strands in DM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
749 751first strand
Strand 2
D
732 743parallel
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There are 5 strands in DN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
762 765first strand
Strand 2
D
801 806parallel
Strand 3
D
785 795anti-parallel
Strand 4
D
732 743anti-parallel
Strand 5
D
749 751parallel
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There are 5 strands in DO sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
762 765first strand
Strand 2
D
801 806parallel
Strand 3
D
785 795anti-parallel
Strand 4
D
732 743anti-parallel
Strand 5
D
720 727anti-parallel
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There are 4 strands in DP sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
811 819first strand
Strand 2
D
828 835anti-parallel
Strand 3
D
846 854anti-parallel
Strand 4
D
857 866anti-parallel
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There are 4 strands in DQ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
870 876first strand
Strand 2
D
879 884anti-parallel
Strand 3
D
887 893anti-parallel
Strand 4
D
899 906anti-parallel
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There are 4 strands in DR sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
913 917first strand
Strand 2
D
920 924anti-parallel
Strand 3
D
929 935anti-parallel
Strand 4
D
942 949anti-parallel
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There are 4 strands in DS sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
954 959first strand
Strand 2
D
964 969anti-parallel
Strand 3
D
973 978anti-parallel
Strand 4
D
993 999anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1076 1077first strand
Strand 2
D
1082 1083anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
65 66first strand
Strand 2
E
132 146parallel
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There are 5 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
78 82first strand
Strand 2
E
179 184anti-parallel
Strand 3
E
155 169anti-parallel
Strand 4
E
132 146anti-parallel
Strand 5
E
119 127anti-parallel
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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
78 82first strand
Strand 2
E
179 184anti-parallel
Strand 3
E
155 169anti-parallel
Strand 4
E
96 101anti-parallel
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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
119 127first strand
Strand 2
E
132 146anti-parallel
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There are 5 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
78 82first strand
Strand 2
E
179 184anti-parallel
Strand 3
E
155 169anti-parallel
Strand 4
E
132 146anti-parallel
Strand 5
E
65 66parallel
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There are 3 strands in EF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
330 333first strand
Strand 2
E
320 323anti-parallel
Strand 3
E
422 425anti-parallel
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There are 6 strands in EG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
346 350first strand
Strand 2
E
356 362anti-parallel
Strand 3
E
413 418anti-parallel
Strand 4
E
397 404anti-parallel
Strand 5
E
384 391anti-parallel
Strand 6
E
368 375anti-parallel
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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
12 13first strand
Strand 2
F
17 24anti-parallel
Strand 3
F
29 36anti-parallel
Strand 4
F
42 49anti-parallel
Strand 5
F
85 91anti-parallel
Strand 6
F
76 82anti-parallel
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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
132 133first strand
Strand 2
F
162 163anti-parallel
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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
142 144first strand
Strand 2
F
153 155anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il