Analysis of interatomic Contacts of Structural Units in PDB entry:
5FVN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FVN entry

There are 4 chains in PDB entry 5FVN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PHE 342
B
 ALA 1PHE 342
C
 ALA 1PHE 342
D
 ALA 1ALA 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5FVN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
83 85Right-handed 310
Helix 2
2
A
97 102Right-handed alpha
Helix 3
3
A
103 105Right-handed 310
Helix 4
4
A
135 139Right-handed alpha
Helix 5
5
A
167 171Right-handed 310
Helix 6
6
A
202 206Right-handed 310
Helix 7
7
A
320 327Right-handed alpha
Helix 8
8
B
83 85Right-handed 310
Helix 9
9
B
97 102Right-handed alpha
Helix 10
10
B
103 105Right-handed 310
Helix 11
11
B
135 139Right-handed 310
Helix 12
12
B
167 171Right-handed 310
Helix 13
13
B
202 206Right-handed 310
Helix 14
14
B
320 327Right-handed alpha
Helix 15
15
C
83 85Right-handed 310
Helix 16
16
C
97 102Right-handed alpha
Helix 17
17
C
103 105Right-handed 310
Helix 18
18
C
135 139Right-handed 310
Helix 19
19
C
167 171Right-handed 310
Helix 20
20
C
200 206Right-handed alpha
Helix 21
21
C
320 327Right-handed alpha
Helix 22
22
D
97 102Right-handed alpha
Helix 23
23
D
103 105Right-handed 310
Helix 24
24
D
167 171Right-handed 310
Helix 25
25
D
202 206Right-handed 310
Helix 26
26
D
320 327Right-handed alpha
Helix 27
27
E
83 85Right-handed 310
Helix 28
28
E
97 102Right-handed alpha
Helix 29
29
E
103 105Right-handed 310
Helix 30
30
E
135 139Right-handed 310
Helix 31
31
E
167 171Right-handed 310
Helix 32
32
E
202 206Right-handed 310
Helix 33
33
E
320 327Right-handed alpha
Helix 34
34
F
97 102Right-handed alpha
Helix 35
35
F
103 105Right-handed 310
Helix 36
36
F
134 139Right-handed alpha
Helix 37
37
F
157 160Right-handed 310
Helix 38
38
F
167 171Right-handed 310
Helix 39
39
F
202 206Right-handed 310
Helix 40
40
F
320 327Right-handed alpha
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There are 13 sheets in PDB entry 5FVN. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, C, EA, EB, FA, FB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
9 23anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
9 23parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
9 24anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
9 24parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 6first strand
Strand 2
C
9 23anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 32first strand
Strand 2
C
9 23parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 6first strand
Strand 2
D
9 24anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 32first strand
Strand 2
D
9 24parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
242 243first strand
Strand 2
D
247 248anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 6first strand
Strand 2
E
9 24anti-parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
31 32first strand
Strand 2
E
9 24parallel
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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2 6first strand
Strand 2
F
9 24anti-parallel
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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
31 32first strand
Strand 2
F
9 24parallel
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