Analysis of interatomic Contacts of Structural Units in PDB entry:
5FWP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FWP entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 5FWP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 10ILE 690
B
GLU 10ASP 691
E
VAL 2VAL 12
E
ASP 14LYS 260
K
ILE 87LEU 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 5FWP. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
20 32Right-handed alpha
Helix 2
2
A
37 61Right-handed alpha
Helix 3
3
A
62 66Right-handed 310
Helix 4
4
A
94 101Right-handed alpha
Helix 5
5
A
109 117Right-handed alpha
Helix 6
6
A
131 138Right-handed 310
Helix 7
7
A
189 193Right-handed 310
Helix 8
8
A
194 204Right-handed alpha
Helix 9
9
A
280 284Right-handed 310
Helix 10
10
A
292 296Right-handed 310
Helix 11
11
A
297 309Right-handed alpha
Helix 12
12
A
365 370Right-handed alpha
Helix 13
13
A
371 375Right-handed 310
Helix 14
14
A
398 422Right-handed alpha
Helix 15
15
A
422 444Right-handed alpha
Helix 16
16
A
447 452Right-handed alpha
Helix 17
17
A
469 475Right-handed alpha
Helix 18
18
A
490 495Right-handed alpha
Helix 19
19
A
496 499Right-handed 310
Helix 20
20
A
500 506Right-handed alpha
Helix 21
21
A
515 522Right-handed alpha
Helix 22
22
A
546 560Right-handed alpha
Helix 23
23
A
560 571Right-handed alpha
Helix 24
24
A
599 610Right-handed alpha
Helix 25
25
A
614 622Right-handed alpha
Helix 26
26
A
632 645Right-handed alpha
Helix 27
27
A
648 666Right-handed alpha
Helix 28
28
A
672 689Right-handed alpha
Helix 29
29
B
20 29Right-handed alpha
Helix 30
30
B
38 61Right-handed alpha
Helix 31
31
B
62 66Right-handed 310
Helix 32
32
B
94 101Right-handed alpha
Helix 33
33
B
108 117Right-handed alpha
Helix 34
34
B
118 120Right-handed 310
Helix 35
35
B
131 138Right-handed 310
Helix 36
36
B
187 193Right-handed 310
Helix 37
37
B
194 206Right-handed alpha
Helix 38
38
B
280 284Right-handed 310
Helix 39
39
B
292 296Right-handed 310
Helix 40
40
B
297 310Right-handed alpha
Helix 41
41
B
365 370Right-handed alpha
Helix 42
42
B
371 375Right-handed 310
Helix 43
43
B
398 422Right-handed alpha
Helix 44
44
B
422 444Right-handed alpha
Helix 45
45
B
447 453Right-handed alpha
Helix 46
46
B
469 475Right-handed alpha
Helix 47
47
B
490 496Right-handed alpha
Helix 48
48
B
497 499Right-handed 310
Helix 49
49
B
500 506Right-handed alpha
Helix 50
50
B
517 525Right-handed alpha
Helix 51
51
B
546 560Right-handed alpha
Helix 52
52
B
560 571Right-handed alpha
Helix 53
53
B
599 607Right-handed alpha
Helix 54
54
B
613 620Right-handed 310
Helix 55
55
B
632 646Right-handed alpha
Helix 56
56
B
648 666Right-handed alpha
Helix 57
57
B
672 689Right-handed alpha
Helix 58
58
E
4 8Right-handed 310
Helix 59
59
E
24 74Right-handed alpha
Helix 60
60
E
77 111Right-handed alpha
Helix 61
61
E
139 155Right-handed alpha
Helix 62
62
E
155 164Right-handed alpha
Helix 63
63
E
167 178Right-handed alpha
Helix 64
64
E
179 182Right-handed 310
Helix 65
65
E
183 200Right-handed alpha
Helix 66
66
E
202 226Right-handed alpha
Helix 67
67
E
229 232Right-handed 310
Helix 68
68
E
233 244Right-handed alpha
Helix 69
69
E
245 260Right-handed alpha
Helix 70
70
K
99 107Right-handed alpha
Helix 71
71
K
113 134Right-handed alpha
Helix 72
72
K
142 144Right-handed 310
Helix 73
73
K
160 164Right-handed 310
Helix 74
74
K
182 187Right-handed alpha
Helix 75
75
K
192 210Right-handed alpha
Helix 76
76
K
218 231Right-handed alpha
Helix 77
77
K
256 261Right-handed alpha
Helix 78
78
K
265 277Right-handed alpha
Helix 79
79
K
285 291Right-handed alpha
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There are 11 sheets in PDB entry 5FWP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, KA,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
13 16first strand
Strand 2
B
164 169anti-parallel
Strand 3
B
154 159anti-parallel
Strand 4
B
140 148anti-parallel
Strand 5
B
178 185anti-parallel
Strand 6
B
83 88anti-parallel
Strand 7
B
73 78anti-parallel
Strand 8
B
213 219parallel
Strand 9
B
275 279anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
18 19first strand
Strand 2
B
104 105parallel
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There are 9 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
276 278first strand
Strand 2
A
213 218anti-parallel
Strand 3
A
73 78parallel
Strand 4
A
83 88anti-parallel
Strand 5
A
179 185anti-parallel
Strand 6
A
140 147anti-parallel
Strand 7
A
155 159anti-parallel
Strand 8
A
164 169anti-parallel
Strand 9
B
12 16anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
104 105first strand
Strand 2
B
18 19parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
317 323first strand
Strand 2
A
329 335anti-parallel
Strand 3
A
378 383anti-parallel
Strand 4
A
353 357parallel
Strand 5
A
360 363anti-parallel
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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
467 468first strand
Strand 2
A
456 459anti-parallel
Strand 3
A
510 513anti-parallel
Strand 4
A
483 487parallel
Strand 5
A
531 535parallel
Strand 6
A
527 528anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
578 580first strand
Strand 2
A
624 628parallel
Strand 3
A
589 593anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
360 363first strand
Strand 2
B
353 357anti-parallel
Strand 3
B
378 383parallel
Strand 4
B
329 335anti-parallel
Strand 5
B
317 325anti-parallel
Strand 6
E
120 129anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
467 468first strand
Strand 2
B
456 459anti-parallel
Strand 3
B
510 513anti-parallel
Strand 4
B
482 487parallel
Strand 5
B
531 535parallel
Strand 6
B
527 528anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
577 580first strand
Strand 2
B
624 628parallel
Strand 3
B
589 593anti-parallel
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There are 2 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
146 148first strand
Strand 2
K
154 156anti-parallel
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