Analysis of interatomic Contacts of Structural Units in PDB entry:
5G1N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G1N entry

There are 6 chains in PDB entry 5G1N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 1920PHE 2225
B
SER 1920PHE 2225
C
SER 1920PHE 2225
D
SER 1920PHE 2225
E
HIS 1919PHE 2225
F
SER 1920PHE 2225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 95 helices in PDB entry 5G1N. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1928 1932Right-handed 310
Helix 2
2
A
1933 1953Right-handed alpha
Helix 3
3
A
1974 1987Right-handed alpha
Helix 4
4
A
1997 2004Right-handed 310
Helix 5
5
A
2006 2015Right-handed alpha
Helix 6
6
A
2029 2036Right-handed alpha
Helix 7
7
A
2052 2068Right-handed alpha
Helix 8
8
A
2084 2095Right-handed alpha
Helix 9
9
A
2112 2122Right-handed alpha
Helix 10
10
A
2131 2136Right-handed alpha
Helix 11
11
A
2148 2152Right-handed 310
Helix 12
12
A
2154 2161Right-handed alpha
Helix 13
13
A
2168 2173Right-handed alpha
Helix 14
14
A
2192 2196Right-handed 310
Helix 15
15
A
2202 2222Right-handed alpha
Helix 16
16
B
1928 1932Right-handed 310
Helix 17
17
B
1933 1954Right-handed alpha
Helix 18
18
B
1974 1987Right-handed alpha
Helix 19
19
B
1997 2004Right-handed 310
Helix 20
20
B
2006 2018Right-handed alpha
Helix 21
21
B
2029 2035Right-handed alpha
Helix 22
22
B
2052 2068Right-handed alpha
Helix 23
23
B
2084 2094Right-handed alpha
Helix 24
24
B
2095 2097Right-handed 310
Helix 25
25
B
2112 2122Right-handed alpha
Helix 26
26
B
2131 2136Right-handed alpha
Helix 27
27
B
2148 2152Right-handed 310
Helix 28
28
B
2154 2160Right-handed alpha
Helix 29
29
B
2168 2173Right-handed alpha
Helix 30
30
B
2192 2198Right-handed 310
Helix 31
31
B
2202 2222Right-handed alpha
Helix 32
32
C
1928 1932Right-handed 310
Helix 33
33
C
1933 1953Right-handed alpha
Helix 34
34
C
1974 1986Right-handed alpha
Helix 35
35
C
1997 2004Right-handed 310
Helix 36
36
C
2006 2015Right-handed alpha
Helix 37
37
C
2029 2037Right-handed alpha
Helix 38
38
C
2052 2068Right-handed alpha
Helix 39
39
C
2084 2094Right-handed alpha
Helix 40
40
C
2106 2110Right-handed 310
Helix 41
41
C
2112 2123Right-handed alpha
Helix 42
42
C
2131 2136Right-handed alpha
Helix 43
43
C
2148 2152Right-handed 310
Helix 44
44
C
2154 2162Right-handed alpha
Helix 45
45
C
2168 2173Right-handed alpha
Helix 46
46
C
2192 2198Right-handed 310
Helix 47
47
C
2202 2222Right-handed alpha
Helix 48
48
D
1928 1932Right-handed 310
Helix 49
49
D
1933 1954Right-handed alpha
Helix 50
50
D
1974 1987Right-handed alpha
Helix 51
51
D
2006 2018Right-handed alpha
Helix 52
52
D
2029 2037Right-handed alpha
Helix 53
53
D
2052 2067Right-handed alpha
Helix 54
54
D
2084 2095Right-handed alpha
Helix 55
55
D
2106 2110Right-handed 310
Helix 56
56
D
2112 2123Right-handed alpha
Helix 57
57
D
2131 2136Right-handed alpha
Helix 58
58
D
2137 2139Right-handed 310
Helix 59
59
D
2148 2152Right-handed 310
Helix 60
60
D
2154 2162Right-handed alpha
Helix 61
61
D
2168 2174Right-handed alpha
Helix 62
62
D
2192 2198Right-handed 310
Helix 63
63
D
2202 2222Right-handed alpha
Helix 64
64
E
1933 1953Right-handed alpha
Helix 65
65
E
1974 1987Right-handed alpha
Helix 66
66
E
1997 2004Right-handed 310
Helix 67
67
E
2006 2018Right-handed alpha
Helix 68
68
E
2029 2036Right-handed alpha
Helix 69
69
E
2052 2068Right-handed alpha
Helix 70
70
E
2084 2095Right-handed alpha
Helix 71
71
E
2106 2110Right-handed 310
Helix 72
72
E
2112 2123Right-handed alpha
Helix 73
73
E
2131 2136Right-handed alpha
Helix 74
74
E
2148 2152Right-handed 310
Helix 75
75
E
2154 2162Right-handed alpha
Helix 76
76
E
2168 2173Right-handed alpha
Helix 77
77
E
2192 2196Right-handed 310
Helix 78
78
E
2202 2222Right-handed alpha
Helix 79
79
F
1928 1932Right-handed 310
Helix 80
80
F
1933 1953Right-handed alpha
Helix 81
81
F
1974 1987Right-handed alpha
Helix 82
82
F
1999 2004Right-handed 310
Helix 83
83
F
2006 2018Right-handed alpha
Helix 84
84
F
2029 2035Right-handed alpha
Helix 85
85
F
2052 2068Right-handed alpha
Helix 86
86
F
2084 2094Right-handed alpha
Helix 87
87
F
2095 2097Right-handed 310
Helix 88
88
F
2106 2110Right-handed 310
Helix 89
89
F
2112 2122Right-handed alpha
Helix 90
90
F
2131 2136Right-handed alpha
Helix 91
91
F
2137 2139Right-handed 310
Helix 92
92
F
2154 2162Right-handed alpha
Helix 93
93
F
2170 2174Right-handed 310
Helix 94
94
F
2192 2198Right-handed 310
Helix 95
95
F
2202 2222Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 5G1N. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1990 1995first strand
Strand 2
A
1964 1969parallel
Strand 3
A
2020 2025parallel
Strand 4
A
2042 2047parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2126 2129first strand
Strand 2
A
2100 2104parallel
Strand 3
A
2074 2078parallel
Strand 4
A
2141 2144parallel
Strand 5
A
2180 2182parallel
Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1990 1995first strand
Strand 2
B
1964 1969parallel
Strand 3
B
2020 2025parallel
Strand 4
B
2042 2047parallel
Back to list of sheets
Back to top of page

There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2125 2128first strand
Strand 2
B
2099 2104parallel
Strand 3
B
2073 2078parallel
Strand 4
B
2141 2144parallel
Strand 5
B
2180 2182parallel
Back to list of sheets
Back to top of page

There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1990 1995first strand
Strand 2
C
1964 1969parallel
Strand 3
C
2020 2025parallel
Strand 4
C
2042 2047parallel
Back to list of sheets
Back to top of page

There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2126 2129first strand
Strand 2
C
2099 2104parallel
Strand 3
C
2073 2078parallel
Strand 4
C
2141 2144parallel
Strand 5
C
2180 2182parallel
Back to list of sheets
Back to top of page

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1990 1995first strand
Strand 2
D
1964 1969parallel
Strand 3
D
2020 2025parallel
Strand 4
D
2042 2047parallel
Back to list of sheets
Back to top of page

There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
2125 2128first strand
Strand 2
D
2099 2104parallel
Strand 3
D
2073 2078parallel
Strand 4
D
2141 2144parallel
Strand 5
D
2180 2182parallel
Back to list of sheets
Back to top of page

There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
1990 1995first strand
Strand 2
E
1964 1969parallel
Strand 3
E
2020 2025parallel
Strand 4
E
2042 2047parallel
Back to list of sheets
Back to top of page

There are 5 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
2126 2127first strand
Strand 2
E
2100 2104parallel
Strand 3
E
2074 2078parallel
Strand 4
E
2141 2144parallel
Strand 5
E
2180 2182parallel
Back to list of sheets
Back to top of page

There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
1990 1995first strand
Strand 2
F
1964 1969parallel
Strand 3
F
2020 2025parallel
Strand 4
F
2042 2047parallel
Back to list of sheets
Back to top of page

There are 5 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
2126 2129first strand
Strand 2
F
2099 2104parallel
Strand 3
F
2073 2078parallel
Strand 4
F
2141 2143parallel
Strand 5
F
2180 2182parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il