Analysis of interatomic Contacts of Structural Units in PDB entry:
5GGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GGP entry

There are 4 chains in PDB entry 5GGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 98SER 247
B
VAL 98SER 247
C
THR 2VAL 6
D
THR 2GLY 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 5GGP. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
155 166Right-handed alpha
Helix 2
AA2
A
186 196Right-handed alpha
Helix 3
AA3
A
200 204Right-handed 310
Helix 4
AA4
B
155 166Right-handed alpha
Helix 5
AA5
B
186 196Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5GGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
117 122first strand
Strand 2
A
110 114anti-parallel
Strand 3
A
99 105anti-parallel
Strand 4
A
238 244anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
143 149first strand
Strand 2
A
130 136anti-parallel
Strand 3
A
172 178anti-parallel
Strand 4
A
209 215anti-parallel
Strand 5
A
220 226anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
117 122first strand
Strand 2
B
110 114anti-parallel
Strand 3
B
99 105anti-parallel
Strand 4
B
238 244anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
143 149first strand
Strand 2
B
130 136anti-parallel
Strand 3
B
172 178anti-parallel
Strand 4
B
209 215anti-parallel
Strand 5
B
220 226anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il