Analysis of interatomic Contacts of Structural Units in PDB entry:
5GHV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GHV entry

There are 2 chains in PDB entry 5GHV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 363	ASN 635
B	VAL 363	ASN 635

There are 20 helices in PDB entry 5GHV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	413	427	Right-handed alpha
Helix 2	AA2	A	456	462	Right-handed alpha
Helix 3	AA3	A	467	488	Right-handed alpha
Helix 4	AA4	A	496	498	Right-handed 310
Helix 5	AA5	A	535	539	Right-handed 310
Helix 6	AA6	A	540	546	Right-handed alpha
Helix 7	AA7	A	550	567	Right-handed alpha
Helix 8	AA8	A	577	587	Right-handed alpha
Helix 9	AA9	A	598	609	Right-handed alpha
Helix 10	AB1	A	618	632	Right-handed alpha
Helix 11	AB2	B	413	427	Right-handed alpha
Helix 12	AB3	B	456	462	Right-handed alpha
Helix 13	AB4	B	467	488	Right-handed alpha
Helix 14	AB5	B	496	498	Right-handed 310
Helix 15	AB6	B	535	539	Right-handed 310
Helix 16	AB7	B	540	546	Right-handed alpha
Helix 17	AB8	B	550	567	Right-handed alpha
Helix 18	AB9	B	577	587	Right-handed alpha
Helix 19	AC1	B	598	609	Right-handed alpha
Helix 20	AC2	B	618	635	Right-handed alpha

There are 10 sheets in PDB entry 5GHV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	372	first strand
Strand 2	A	383	391	anti-parallel
Strand 3	A	396	404	anti-parallel
Strand 4	A	444	449	anti-parallel
Strand 5	A	435	440	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	372	first strand
Strand 2	A	383	391	anti-parallel
Strand 3	A	396	404	anti-parallel
Strand 4	B	589	590	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	455	first strand
Strand 2	A	500	504	anti-parallel
Strand 3	A	507	510	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	491	first strand
Strand 2	A	517	518	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	527	first strand
Strand 2	A	548	549	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	372	first strand
Strand 2	B	383	391	anti-parallel
Strand 3	B	378	380	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	372	first strand
Strand 2	B	383	391	anti-parallel
Strand 3	B	396	404	anti-parallel
Strand 4	B	444	449	anti-parallel
Strand 5	B	435	440	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	455	first strand
Strand 2	B	500	504	anti-parallel
Strand 3	B	507	510	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	491	first strand
Strand 2	B	517	518	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	527	first strand
Strand 2	B	548	549	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GHV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GHV