Analysis of interatomic Contacts of Structural Units in PDB entry:
5GJE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GJE entry

There are 3 chains in PDB entry 5GJE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	PRO 611
B	GLU 631	CYS 1243
C	LYS 182	HIS 223

There are 9 helices in PDB entry 5GJE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	256	260	Right-handed 310
Helix 2	AA2	A	479	483	Right-handed 310
Helix 3	AA3	A	571	580	Right-handed 310
Helix 4	AA4	B	883	887	Right-handed 310
Helix 5	AA5	B	891	900	Right-handed 310
Helix 6	AA6	B	1198	1204	Right-handed alpha
Helix 7	AA7	B	1209	1214	Right-handed 310
Helix 8	AA8	C	191	195	Right-handed 310
Helix 9	AA9	C	225	232	Right-handed alpha

There are 33 sheets in PDB entry 5GJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	15	first strand
Strand 2	A	4	7	anti-parallel
Strand 3	A	252	254	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	40	first strand
Strand 2	A	45	50	anti-parallel
Strand 3	A	55	60	anti-parallel
Strand 4	A	67	71	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	84	first strand
Strand 2	A	89	94	anti-parallel
Strand 3	A	99	104	anti-parallel
Strand 4	A	111	114	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	127	first strand
Strand 2	A	132	137	anti-parallel
Strand 3	A	143	148	anti-parallel
Strand 4	A	155	158	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	171	first strand
Strand 2	A	176	181	anti-parallel
Strand 3	A	188	191	anti-parallel
Strand 4	A	198	199	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	213	first strand
Strand 2	A	217	222	anti-parallel
Strand 3	A	227	232	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	280	first strand
Strand 2	A	287	290	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	A	320	324	anti-parallel
Strand 3	A	310	316	anti-parallel
Strand 4	A	556	563	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	349	first strand
Strand 2	A	354	359	anti-parallel
Strand 3	A	364	368	anti-parallel
Strand 4	A	376	379	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	392	first strand
Strand 2	A	397	402	anti-parallel
Strand 3	A	407	412	anti-parallel
Strand 4	A	419	423	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	435	first strand
Strand 2	A	440	446	anti-parallel
Strand 3	A	451	456	anti-parallel
Strand 4	A	463	466	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	476	first strand
Strand 2	A	487	489	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	497	first strand
Strand 2	A	506	510	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	522	first strand
Strand 2	A	525	529	anti-parallel
Strand 3	A	536	540	anti-parallel
Strand 4	A	548	550	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	585	first strand
Strand 2	A	592	594	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	600	601	first strand
Strand 2	A	608	609	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	653	655	first strand
Strand 2	B	641	645	anti-parallel
Strand 3	B	633	638	anti-parallel
Strand 4	B	879	882	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	664	670	first strand
Strand 2	B	675	680	anti-parallel
Strand 3	B	685	690	anti-parallel
Strand 4	B	697	700	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	709	713	first strand
Strand 2	B	718	723	anti-parallel
Strand 3	B	728	733	anti-parallel
Strand 4	B	740	743	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	750	755	first strand
Strand 2	B	761	766	anti-parallel
Strand 3	B	772	777	anti-parallel
Strand 4	B	784	787	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	793	799	first strand
Strand 2	B	804	809	anti-parallel
Strand 3	B	814	819	anti-parallel
Strand 4	B	826	829	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	835	841	first strand
Strand 2	B	844	849	anti-parallel
Strand 3	B	854	859	anti-parallel
Strand 4	B	867	871	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	903	907	first strand
Strand 2	B	911	915	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	921	922	first strand
Strand 2	B	929	930	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	957	958	first strand
Strand 2	B	944	947	anti-parallel
Strand 3	B	935	940	anti-parallel
Strand 4	B	1188	1194	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	971	973	first strand
Strand 2	B	978	983	anti-parallel
Strand 3	B	988	992	anti-parallel
Strand 4	B	1000	1003	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1016	1022	first strand
Strand 2	B	1027	1032	anti-parallel
Strand 3	B	1037	1042	anti-parallel
Strand 4	B	1047	1053	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1059	1064	first strand
Strand 2	B	1070	1077	anti-parallel
Strand 3	B	1080	1087	anti-parallel
Strand 4	B	1094	1097	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1104	1110	first strand
Strand 2	B	1115	1120	anti-parallel
Strand 3	B	1125	1130	anti-parallel
Strand 4	B	1137	1140	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1147	1153	first strand
Strand 2	B	1156	1161	anti-parallel
Strand 3	B	1166	1171	anti-parallel
Strand 4	B	1179	1182	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1217	1220	first strand
Strand 2	B	1226	1229	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	204	first strand
Strand 2	C	207	212	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	247	first strand
Strand 2	C	261	265	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GJE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GJE