Analysis of interatomic Contacts of Structural Units in PDB entry:
5GJV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GJV entry

There are 5 chains in PDB entry 5GJV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 32	ASP 1515
B	GLN 75	GLN 174
C	VAL 265	SER 461
E	MET 1	MET 216
F	PHE 29	CYS 1074

There are114 helices in PDB entry 5GJV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	49	Right-handed alpha
Helix 2	AA2	A	52	68	Right-handed alpha
Helix 3	AA3	A	81	108	Right-handed alpha
Helix 4	AA4	A	109	113	Right-handed 310
Helix 5	AA5	A	115	120	Right-handed alpha
Helix 6	AA6	A	120	139	Right-handed alpha
Helix 7	AA7	A	166	170	Right-handed 310
Helix 8	AA8	A	171	179	Right-handed alpha
Helix 9	AA9	A	181	191	Right-handed alpha
Helix 10	AB1	A	196	219	Right-handed alpha
Helix 11	AB2	A	277	285	Right-handed alpha
Helix 12	AB3	A	285	290	Right-handed alpha
Helix 13	AB4	A	293	305	Right-handed alpha
Helix 14	AB5	A	310	336	Right-handed alpha
Helix 15	AB6	A	336	341	Right-handed alpha
Helix 16	AB7	A	342	344	Right-handed 310
Helix 17	AB8	A	346	375	Right-handed alpha
Helix 18	AB9	A	419	428	Right-handed alpha
Helix 19	AC1	A	432	449	Right-handed alpha
Helix 20	AC2	A	458	485	Right-handed alpha
Helix 21	AC3	A	487	494	Right-handed alpha
Helix 22	AC4	A	494	517	Right-handed alpha
Helix 23	AC5	A	520	532	Right-handed alpha
Helix 24	AC6	A	533	541	Right-handed 310
Helix 25	AC7	A	544	557	Right-handed alpha
Helix 26	AC8	A	561	581	Right-handed alpha
Helix 27	AC9	A	601	612	Right-handed alpha
Helix 28	AD1	A	615	628	Right-handed alpha
Helix 29	AD2	A	634	638	Right-handed 310
Helix 30	AD3	A	639	651	Right-handed alpha
Helix 31	AD4	A	654	663	Right-handed alpha
Helix 32	AD5	A	665	669	Right-handed 310
Helix 33	AD6	A	789	797	Right-handed alpha
Helix 34	AD7	A	798	818	Right-handed alpha
Helix 35	AD8	A	826	852	Right-handed alpha
Helix 36	AD9	A	855	860	Right-handed 310
Helix 37	AE1	A	861	885	Right-handed alpha
Helix 38	AE2	A	894	899	Right-handed alpha
Helix 39	AE3	A	900	902	Right-handed 310
Helix 40	AE4	A	903	909	Right-handed alpha
Helix 41	AE5	A	913	950	Right-handed alpha
Helix 42	AE6	A	999	1010	Right-handed alpha
Helix 43	AE7	A	1015	1025	Right-handed alpha
Helix 44	AE8	A	1038	1042	Right-handed 310
Helix 45	AE9	A	1043	1073	Right-handed alpha
Helix 46	AF1	A	1083	1093	Right-handed alpha
Helix 47	AF2	A	1105	1116	Right-handed alpha
Helix 48	AF3	A	1117	1125	Right-handed alpha
Helix 49	AF4	A	1125	1137	Right-handed alpha
Helix 50	AF5	A	1143	1173	Right-handed alpha
Helix 51	AF6	A	1180	1204	Right-handed alpha
Helix 52	AF7	A	1229	1235	Right-handed 310
Helix 53	AF8	A	1236	1241	Right-handed alpha
Helix 54	AF9	A	1242	1246	Right-handed 310
Helix 55	AG1	A	1250	1264	Right-handed alpha
Helix 56	AG2	A	1266	1289	Right-handed alpha
Helix 57	AG3	A	1308	1321	Right-handed alpha
Helix 58	AG4	A	1324	1332	Right-handed alpha
Helix 59	AG5	A	1357	1383	Right-handed alpha
Helix 60	AG6	A	1383	1388	Right-handed alpha
Helix 61	AG7	A	1395	1410	Right-handed alpha
Helix 62	AG8	A	1421	1428	Right-handed alpha
Helix 63	AG9	A	1443	1451	Right-handed alpha
Helix 64	AH1	A	1456	1458	Right-handed 310
Helix 65	AH2	A	1462	1473	Right-handed alpha
Helix 66	AH3	A	1481	1498	Right-handed alpha
Helix 67	AH4	A	1504	1514	Right-handed alpha
Helix 68	AH5	B	77	79	Right-handed 310
Helix 69	AH6	B	80	96	Right-handed alpha
Helix 70	AH7	B	114	118	Right-handed 310
Helix 71	AH8	B	161	174	Right-handed alpha
Helix 72	AH9	C	287	305	Right-handed alpha
Helix 73	AI1	C	317	321	Right-handed 310
Helix 74	AI2	C	343	358	Right-handed alpha
Helix 75	AI3	C	373	377	Right-handed 310
Helix 76	AI4	C	393	404	Right-handed alpha
Helix 77	AI5	C	405	410	Right-handed alpha
Helix 78	AI6	C	411	425	Right-handed alpha
Helix 79	AI7	C	426	430	Right-handed 310
Helix 80	AI8	C	438	458	Right-handed alpha
Helix 81	AI9	E	2	6	Right-handed alpha
Helix 82	AJ1	E	6	29	Right-handed alpha
Helix 83	AJ2	E	105	129	Right-handed alpha
Helix 84	AJ3	E	136	165	Right-handed alpha
Helix 85	AJ4	E	179	204	Right-handed alpha
Helix 86	AJ5	F	31	54	Right-handed alpha
Helix 87	AJ6	F	55	66	Right-handed alpha
Helix 88	AJ7	F	77	112	Right-handed alpha
Helix 89	AJ8	F	180	188	Right-handed alpha
Helix 90	AJ9	F	190	202	Right-handed alpha
Helix 91	AK1	F	239	243	Right-handed 310
Helix 92	AK2	F	268	282	Right-handed alpha
Helix 93	AK3	F	283	285	Right-handed 310
Helix 94	AK4	F	315	324	Right-handed alpha
Helix 95	AK5	F	325	327	Right-handed 310
Helix 96	AK6	F	335	346	Right-handed alpha
Helix 97	AK7	F	371	379	Right-handed alpha
Helix 98	AK8	F	398	408	Right-handed alpha
Helix 99	AK9	F	420	425	Right-handed alpha
Helix 100	AL1	F	427	433	Right-handed alpha
Helix 101	AL2	F	433	438	Right-handed alpha
Helix 102	AL3	F	496	501	Right-handed alpha
Helix 103	AL4	F	562	567	Right-handed alpha
Helix 104	AL5	F	572	581	Right-handed alpha
Helix 105	AL6	F	642	651	Right-handed alpha
Helix 106	AL7	F	652	656	Right-handed 310
Helix 107	AL8	F	678	694	Right-handed alpha
Helix 108	AL9	F	703	723	Right-handed alpha
Helix 109	AM1	F	750	755	Right-handed 310
Helix 110	AM2	F	766	773	Right-handed alpha
Helix 111	AM3	F	820	831	Right-handed alpha
Helix 112	AM4	F	877	881	Right-handed 310
Helix 113	AM5	F	882	892	Right-handed alpha
Helix 114	AM6	F	1045	1050	Right-handed alpha

There are 17 sheets in PDB entry 5GJV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	955	957	first strand
Strand 2	A	990	992	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	971	975	first strand
Strand 2	A	983	987	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1417	1418	first strand
Strand 2	A	1460	1461	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	160	first strand
Strand 2	B	144	149	anti-parallel
Strand 3	B	133	139	anti-parallel
Strand 4	B	103	107	anti-parallel
Strand 5	C	268	271	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	314	first strand
Strand 2	C	363	368	parallel
Strand 3	C	277	280	parallel
Strand 4	C	385	389	parallel
Strand 5	C	432	434	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	81	first strand
Strand 2	E	56	59	anti-parallel
Strand 3	E	48	50	anti-parallel
Strand 4	E	33	36	anti-parallel
Strand 5	E	175	178	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	74	first strand
Strand 2	F	632	633	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	154	first strand
Strand 2	F	159	161	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	169	first strand
Strand 2	F	217	219	anti-parallel
Strand 3	F	208	211	anti-parallel
Strand 4	F	486	495	anti-parallel
Strand 5	F	460	469	anti-parallel
Strand 6	F	447	453	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	254	255	first strand
Strand 2	F	357	364	parallel
Strand 3	F	258	261	parallel
Strand 4	F	293	296	parallel
Strand 5	F	300	301	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	254	255	first strand
Strand 2	F	357	364	parallel
Strand 3	F	385	391	parallel
Strand 4	F	411	415	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	517	518	first strand
Strand 2	F	522	523	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	586	595	first strand
Strand 2	F	602	613	anti-parallel
Strand 3	F	621	627	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	661	664	first strand
Strand 2	F	743	746	anti-parallel
Strand 3	F	736	739	anti-parallel
Strand 4	F	813	819	anti-parallel
Strand 5	F	795	800	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	862	865	first strand
Strand 2	F	853	856	anti-parallel
Strand 3	F	1016	1021	anti-parallel
Strand 4	F	1003	1011	anti-parallel
Strand 5	F	993	998	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	896	902	first strand
Strand 2	F	978	985	anti-parallel
Strand 3	F	1038	1041	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	906	907	first strand
Strand 2	F	975	976	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GJV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GJV