Analysis of interatomic Contacts of Structural Units in PDB entry:
5GSE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GSE entry

There are 19 chains in PDB entry 5GSE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
HIS 39ARG 134
B
VAL 21GLY 102
C
THR 16PRO 117
D
SER 32SER 123
E
PRO 38ARG 134
F
ARG 23GLY 101
G
LYS 9PRO 117
H
LYS 34ALA 124
I
A 1 C 26
I
T 28 C 129
I
A 136 T 250
J
A 1 C 221
J
A 223 T 250
K
ALA 47ARG 134
L
ASN 25GLN 93
M
ALA 12PRO 117
N
SER 32ALA 124
O
HIS 39ARG 134
P
VAL 21GLY 101
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 5GSE. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
45 57Right-handed alpha
Helix 2
AA2
A
63 79Right-handed alpha
Helix 3
AA3
A
85 114Right-handed alpha
Helix 4
AA4
A
120 131Right-handed alpha
Helix 5
AA5
B
30 41Right-handed alpha
Helix 6
AA6
B
48 76Right-handed alpha
Helix 7
AA7
B
82 93Right-handed alpha
Helix 8
AA8
C
17 22Right-handed alpha
Helix 9
AA9
C
26 37Right-handed alpha
Helix 10
AB1
C
46 73Right-handed alpha
Helix 11
AB2
C
79 89Right-handed alpha
Helix 12
AB3
C
90 97Right-handed alpha
Helix 13
AB4
C
112 116Right-handed 310
Helix 14
AB5
D
37 49Right-handed alpha
Helix 15
AB6
D
55 84Right-handed alpha
Helix 16
AB7
D
90 102Right-handed alpha
Helix 17
AB8
D
103 123Right-handed alpha
Helix 18
AB9
E
44 57Right-handed alpha
Helix 19
AC1
E
63 79Right-handed alpha
Helix 20
AC2
E
85 114Right-handed alpha
Helix 21
AC3
E
120 131Right-handed alpha
Helix 22
AC4
F
25 29Right-handed 310
Helix 23
AC5
F
30 41Right-handed alpha
Helix 24
AC6
F
49 76Right-handed alpha
Helix 25
AC7
F
82 92Right-handed alpha
Helix 26
AC8
G
16 22Right-handed alpha
Helix 27
AC9
G
26 37Right-handed alpha
Helix 28
AD1
G
46 73Right-handed alpha
Helix 29
AD2
G
79 89Right-handed alpha
Helix 30
AD3
G
90 97Right-handed alpha
Helix 31
AD4
G
112 116Right-handed 310
Helix 32
AD5
H
37 49Right-handed alpha
Helix 33
AD6
H
55 84Right-handed alpha
Helix 34
AD7
H
90 102Right-handed alpha
Helix 35
AD8
H
103 123Right-handed alpha
Helix 36
AD9
K
48 57Right-handed alpha
Helix 37
AE1
K
63 79Right-handed alpha
Helix 38
AE2
K
85 114Right-handed alpha
Helix 39
AE3
K
120 131Right-handed alpha
Helix 40
AE4
L
25 29Right-handed 310
Helix 41
AE5
L
30 41Right-handed alpha
Helix 42
AE6
L
49 75Right-handed alpha
Helix 43
AE7
L
82 92Right-handed alpha
Helix 44
AE8
M
16 22Right-handed alpha
Helix 45
AE9
M
26 37Right-handed alpha
Helix 46
AF1
M
45 73Right-handed alpha
Helix 47
AF2
M
79 89Right-handed alpha
Helix 48
AF3
M
90 97Right-handed alpha
Helix 49
AF4
M
112 116Right-handed 310
Helix 50
AF5
N
37 49Right-handed alpha
Helix 51
AF6
N
55 84Right-handed alpha
Helix 52
AF7
N
90 102Right-handed alpha
Helix 53
AF8
N
103 123Right-handed alpha
Helix 54
AF9
O
44 57Right-handed alpha
Helix 55
AG1
O
63 76Right-handed alpha
Helix 56
AG2
O
85 114Right-handed alpha
Helix 57
AG3
O
120 131Right-handed alpha
Helix 58
AG4
P
24 29Right-handed 310
Helix 59
AG5
P
30 41Right-handed alpha
Helix 60
AG6
P
49 76Right-handed alpha
Helix 61
AG7
P
82 93Right-handed alpha
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There are 17 sheets in PDB entry 5GSE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
83 84first strand
Strand 2
B
80 81parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
118 119first strand
Strand 2
B
45 46parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
96 98first strand
Strand 2
G
100 102parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
42 43first strand
Strand 2
D
88 89parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
77 78first strand
Strand 2
D
53 54parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
100 102first strand
Strand 2
F
96 98parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
83 84first strand
Strand 2
F
80 81parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
118 119first strand
Strand 2
F
45 46parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
42 43first strand
Strand 2
H
88 89parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
77 78first strand
Strand 2
H
53 54parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
83 84first strand
Strand 2
L
80 81parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
118 119first strand
Strand 2
L
45 46parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
42 43first strand
Strand 2
N
88 89parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
77 78first strand
Strand 2
N
53 54parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
100 102first strand
Strand 2
P
96 98parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
83 84first strand
Strand 2
P
80 81parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
118 119first strand
Strand 2
P
45 46parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il