Analysis of interatomic Contacts of Structural Units in PDB entry:
5GVS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GVS entry

There are 4 chains in PDB entry 5GVS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 184GLY 399
B
 GLU 185GLY 399
C
 ALA 191GLY 399
D
 ALA 191GLY 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5GVS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
189 199Right-handed alpha
Helix 2
AA2
A
215 218Right-handed 310
Helix 3
AA3
A
227 235Right-handed alpha
Helix 4
AA4
A
235 248Right-handed alpha
Helix 5
AA5
A
266 286Right-handed alpha
Helix 6
AA6
A
302 311Right-handed alpha
Helix 7
AA7
A
320 330Right-handed alpha
Helix 8
AA8
A
345 352Right-handed alpha
Helix 9
AA9
A
354 363Right-handed alpha
Helix 10
AB1
A
379 390Right-handed alpha
Helix 11
AB2
B
189 198Right-handed alpha
Helix 12
AB3
B
227 235Right-handed alpha
Helix 13
AB4
B
235 247Right-handed alpha
Helix 14
AB5
B
248 250Right-handed 310
Helix 15
AB6
B
266 286Right-handed alpha
Helix 16
AB7
B
302 309Right-handed alpha
Helix 17
AB8
B
320 330Right-handed alpha
Helix 18
AB9
B
345 352Right-handed alpha
Helix 19
AC1
B
354 363Right-handed alpha
Helix 20
AC2
B
379 390Right-handed alpha
Helix 21
AC3
C
214 218Right-handed 310
Helix 22
AC4
C
227 235Right-handed alpha
Helix 23
AC5
C
235 250Right-handed alpha
Helix 24
AC6
C
266 286Right-handed alpha
Helix 25
AC7
C
302 308Right-handed alpha
Helix 26
AC8
C
320 330Right-handed alpha
Helix 27
AC9
C
345 352Right-handed alpha
Helix 28
AD1
C
354 363Right-handed alpha
Helix 29
AD2
C
379 390Right-handed alpha
Helix 30
AD3
D
214 218Right-handed 310
Helix 31
AD4
D
227 235Right-handed alpha
Helix 32
AD5
D
235 250Right-handed alpha
Helix 33
AD6
D
266 286Right-handed alpha
Helix 34
AD7
D
302 308Right-handed alpha
Helix 35
AD8
D
320 330Right-handed alpha
Helix 36
AD9
D
345 352Right-handed alpha
Helix 37
AE1
D
354 364Right-handed alpha
Helix 38
AE2
D
379 390Right-handed alpha
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There are 6 sheets in PDB entry 5GVS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
212 213anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 297first strand
Strand 2
A
316 319parallel
Strand 3
A
260 263parallel
Strand 4
A
340 343parallel
Strand 5
A
370 375parallel
Strand 6
A
221 224parallel
Strand 7
A
394 397parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 209first strand
Strand 2
B
212 213anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 297first strand
Strand 2
B
316 319parallel
Strand 3
B
260 263parallel
Strand 4
B
340 343parallel
Strand 5
B
370 375parallel
Strand 6
B
221 224parallel
Strand 7
B
394 397parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
294 297first strand
Strand 2
C
316 319parallel
Strand 3
C
260 263parallel
Strand 4
C
340 343parallel
Strand 5
C
370 375parallel
Strand 6
C
221 224parallel
Strand 7
C
394 397parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
294 297first strand
Strand 2
D
316 319parallel
Strand 3
D
260 263parallel
Strand 4
D
340 343parallel
Strand 5
D
370 375parallel
Strand 6
D
221 224parallel
Strand 7
D
394 397parallel
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