Analysis of interatomic Contacts of Structural Units in PDB entry:
5GZT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GZT entry

There are 2 chains in PDB entry 5GZT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 214	ASN 282
B	SER 283	ALA 1416

There are 42 helices in PDB entry 5GZT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	255	259	Right-handed 310
Helix 2	AA2	B	421	424	Right-handed 310
Helix 3	AA3	B	439	443	Right-handed 310
Helix 4	AA4	B	508	512	Right-handed alpha
Helix 5	AA5	B	579	583	Right-handed 310
Helix 6	AA6	B	604	609	Right-handed alpha
Helix 7	AA7	B	614	623	Right-handed alpha
Helix 8	AA8	B	625	635	Right-handed alpha
Helix 9	AA9	B	636	639	Right-handed 310
Helix 10	AB1	B	656	661	Right-handed alpha
Helix 11	AB2	B	663	681	Right-handed alpha
Helix 12	AB3	B	695	700	Right-handed alpha
Helix 13	AB4	B	706	730	Right-handed alpha
Helix 14	AB5	B	742	747	Right-handed alpha
Helix 15	AB6	B	750	755	Right-handed alpha
Helix 16	AB7	B	756	758	Right-handed 310
Helix 17	AB8	B	791	802	Right-handed alpha
Helix 18	AB9	B	805	807	Right-handed 310
Helix 19	AC1	B	846	853	Right-handed alpha
Helix 20	AC2	B	883	897	Right-handed alpha
Helix 21	AC3	B	906	910	Right-handed 310
Helix 22	AC4	B	914	925	Right-handed alpha
Helix 23	AC5	B	970	972	Right-handed 310
Helix 24	AC6	B	1022	1025	Right-handed 310
Helix 25	AC7	B	1057	1061	Right-handed 310
Helix 26	AC8	B	1091	1096	Right-handed alpha
Helix 27	AC9	B	1100	1109	Right-handed alpha
Helix 28	AD1	B	1111	1126	Right-handed alpha
Helix 29	AD2	B	1142	1147	Right-handed alpha
Helix 30	AD3	B	1149	1167	Right-handed alpha
Helix 31	AD4	B	1181	1186	Right-handed alpha
Helix 32	AD5	B	1192	1216	Right-handed alpha
Helix 33	AD6	B	1228	1235	Right-handed alpha
Helix 34	AD7	B	1236	1241	Right-handed alpha
Helix 35	AD8	B	1242	1244	Right-handed 310
Helix 36	AD9	B	1279	1290	Right-handed alpha
Helix 37	AE1	B	1293	1295	Right-handed 310
Helix 38	AE2	B	1314	1318	Right-handed 310
Helix 39	AE3	B	1333	1341	Right-handed alpha
Helix 40	AE4	B	1374	1389	Right-handed alpha
Helix 41	AE5	B	1397	1401	Right-handed 310
Helix 42	AE6	B	1404	1416	Right-handed alpha

There are 13 sheets in PDB entry 5GZT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	229	first strand
Strand 2	A	246	247	parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	235	first strand
Strand 2	A	252	253	parallel
Strand 3	A	274	276	parallel
Strand 4	B	294	296	parallel
Strand 5	B	316	318	parallel
Strand 6	B	337	339	parallel
Strand 7	B	349	360	parallel
Strand 8	B	367	380	parallel
Strand 9	B	396	402	parallel
Strand 10	B	413	419	parallel
Strand 11	B	434	436	parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	A	263	266	parallel
Strand 3	B	284	287	parallel
Strand 4	B	303	309	parallel
Strand 5	B	322	329	parallel
Strand 6	B	349	360	parallel
Strand 7	B	367	380	parallel
Strand 8	B	388	391	parallel
Strand 9	B	407	409	parallel
Strand 10	B	427	428	parallel
Strand 11	B	444	445	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	473	first strand
Strand 2	B	479	485	anti-parallel
Strand 3	B	521	525	anti-parallel
Strand 4	B	515	517	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	503	507	first strand
Strand 2	B	492	497	anti-parallel
Strand 3	B	533	543	anti-parallel
Strand 4	B	546	547	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	503	507	first strand
Strand 2	B	492	497	anti-parallel
Strand 3	B	533	543	anti-parallel
Strand 4	B	551	557	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	597	600	first strand
Strand 2	B	585	594	anti-parallel
Strand 3	B	644	650	parallel
Strand 4	B	685	689	parallel
Strand 5	B	734	739	parallel
Strand 6	B	760	763	parallel
Strand 7	B	809	814	parallel
Strand 8	B	901	905	parallel
Strand 9	B	560	566	parallel
Strand 10	B	585	594	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	843	845	first strand
Strand 2	B	816	820	anti-parallel
Strand 3	B	878	880	anti-parallel
Strand 4	B	869	873	anti-parallel
Strand 5	B	860	864	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	935	936	first strand
Strand 2	B	954	962	anti-parallel
Strand 3	B	996	1001	anti-parallel
Strand 4	B	985	989	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	942	944	first strand
Strand 2	B	1036	1041	parallel
Strand 3	B	1014	1020	anti-parallel
Strand 4	B	974	977	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	950	951	first strand
Strand 2	B	1004	1005	anti-parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1084	1087	first strand
Strand 2	B	1072	1081	anti-parallel
Strand 3	B	1130	1136	parallel
Strand 4	B	1171	1175	parallel
Strand 5	B	1220	1225	parallel
Strand 6	B	1246	1249	parallel
Strand 7	B	1297	1302	parallel
Strand 8	B	1392	1396	parallel
Strand 9	B	1047	1053	parallel
Strand 10	B	1072	1081	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1306	1308	first strand
Strand 2	B	1368	1371	anti-parallel
Strand 3	B	1356	1361	anti-parallel
Strand 4	B	1347	1351	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GZT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GZT