Analysis of interatomic Contacts of Structural Units in PDB entry:
5H15


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H15 entry

There are 4 chains in PDB entry 5H15 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
CYS 78LEU 440
B
LYS 77LEU 440
C
SER 40VAL 68
D
SER 40VAL 68
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5H15. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
267 280Right-handed alpha
Helix 2
AA2
B
267 280Right-handed alpha
Helix 3
AA3
C
41 63Right-handed alpha
Helix 4
AA4
D
41 62Right-handed alpha
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There are 14 sheets in PDB entry 5H15. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
82 89first strand
Strand 2
A
433 439anti-parallel
Strand 3
A
424 429anti-parallel
Strand 4
A
413 418anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
98 101first strand
Strand 2
A
111 117anti-parallel
Strand 3
A
120 126anti-parallel
Strand 4
A
132 139anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
147 154first strand
Strand 2
A
161 167anti-parallel
Strand 3
A
172 176anti-parallel
Strand 4
A
181 186anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
193 198first strand
Strand 2
A
205 210anti-parallel
Strand 3
A
215 219anti-parallel
Strand 4
A
224 229anti-parallel
Strand 5
A
292 294parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
239 244first strand
Strand 2
A
250 255anti-parallel
Strand 3
A
260 264anti-parallel
Strand 4
A
299 301anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
311 315first strand
Strand 2
A
318 322anti-parallel
Strand 3
A
327 333anti-parallel
Strand 4
A
350 357anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
368 370first strand
Strand 2
A
376 380anti-parallel
Strand 3
A
386 390anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
82 89first strand
Strand 2
B
433 439anti-parallel
Strand 3
B
424 429anti-parallel
Strand 4
B
413 418anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
96 101first strand
Strand 2
B
111 117anti-parallel
Strand 3
B
120 126anti-parallel
Strand 4
B
132 139anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
147 154first strand
Strand 2
B
161 167anti-parallel
Strand 3
B
172 176anti-parallel
Strand 4
B
181 186anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
193 198first strand
Strand 2
B
205 210anti-parallel
Strand 3
B
215 219anti-parallel
Strand 4
B
224 229anti-parallel
Strand 5
B
292 294parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
239 244first strand
Strand 2
B
250 255anti-parallel
Strand 3
B
260 264anti-parallel
Strand 4
B
299 301anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
311 315first strand
Strand 2
B
318 322anti-parallel
Strand 3
B
327 333anti-parallel
Strand 4
B
350 357anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
368 370first strand
Strand 2
B
376 380anti-parallel
Strand 3
B
386 390anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il