Analysis of interatomic Contacts of Structural Units in PDB entry:
5H4Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H4Y entry

There is 1 chain in PDB entry 5H4Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
HIS 107PRO 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 5H4Y. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
182 188Right-handed 310
Helix 2
AA2
A
215 217Right-handed 310
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There are 2 sheets in PDB entry 5H4Y. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
172 180first strand
Strand 2
A
124 133anti-parallel
Strand 3
A
111 119anti-parallel
Strand 4
A
223 228anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
159 161first strand
Strand 2
A
146 153anti-parallel
Strand 3
A
190 197anti-parallel
Strand 4
A
205 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il