Analysis of interatomic Contacts of Structural Units in PDB entry:
5H9W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H9W entry

There are 2 chains in PDB entry 5H9W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 134LYS 295
B
 ASP 134LYS 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5H9W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
142 149Right-handed alpha
Helix 2
AA2
A
157 170Right-handed alpha
Helix 3
AA3
A
182 185Right-handed 310
Helix 4
AA4
A
197 205Right-handed alpha
Helix 5
AA5
A
224 237Right-handed alpha
Helix 6
AA6
A
246 253Right-handed alpha
Helix 7
AA7
A
253 263Right-handed alpha
Helix 8
AA8
A
287 292Right-handed alpha
Helix 9
AA9
B
142 149Right-handed alpha
Helix 10
AB1
B
157 171Right-handed alpha
Helix 11
AB2
B
182 185Right-handed 310
Helix 12
AB3
B
197 205Right-handed alpha
Helix 13
AB4
B
224 237Right-handed alpha
Helix 14
AB5
B
246 253Right-handed alpha
Helix 15
AB6
B
253 263Right-handed alpha
Helix 16
AB7
B
287 292Right-handed alpha
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There are 8 sheets in PDB entry 5H9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
175 180parallel
Strand 3
A
138 141parallel
Strand 4
A
239 241parallel
Strand 5
A
264 265parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
193 194parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 216first strand
Strand 2
A
219 222anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 270first strand
Strand 2
A
273 275anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 211first strand
Strand 2
B
175 180parallel
Strand 3
B
138 141parallel
Strand 4
B
239 241parallel
Strand 5
B
264 265parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 156first strand
Strand 2
B
193 194parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 216first strand
Strand 2
B
219 222anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 270first strand
Strand 2
B
273 275anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il