Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 5HCH entry
There are 5 chains in PDB entry 5HCH
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
ALA 1 | GLY 114 |
B
|
C 1 | T 6 |
B
|
T 8 | C 13 |
E
|
G 14 | A 19 |
E
|
A 21 | G 26 |
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There are no helices in PDB entry
5HCH
There are
2 sheets in PDB entry 5HCH. Click on sheet of
interest to get list of strands forming it:
AA1,
AA2,
There are 4
strands in AA1 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 5 |
7 | first strand |
Strand 2 |
A
| 62 |
69 | anti-parallel |
Strand 3 |
A
| 13 |
32 | anti-parallel |
Strand 4 |
A
| 72 |
73 | first strand |
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There are 6
strands in AA2 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 35 |
56 | first strand |
Strand 2 |
A
| 13 |
32 | anti-parallel |
Strand 3 |
A
| 62 |
69 | anti-parallel |
Strand 4 |
A
| 105 |
111 | first strand |
Strand 5 |
A
| 87 |
95 | anti-parallel |
Strand 6 |
A
| 75 |
83 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il