Analysis of interatomic Contacts of Structural Units in PDB entry:
5HDT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HDT entry

There is 1 chain in PDB entry 5HDT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 20ALA 633
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are140 helices in PDB entry 5HDT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 45Right-handed alpha
Helix 2
AA2
A
49 64Right-handed alpha
Helix 3
AA3
A
65 70Right-handed alpha
Helix 4
AA4
A
73 92Right-handed alpha
Helix 5
AA5
A
99 114Right-handed alpha
Helix 6
AA6
A
115 119Right-handed 310
Helix 7
AA7
A
124 139Right-handed alpha
Helix 8
AA8
A
140 147Right-handed 310
Helix 9
AA9
A
149 165Right-handed alpha
Helix 10
AB1
A
170 187Right-handed alpha
Helix 11
AB2
A
192 201Right-handed alpha
Helix 12
AB3
A
204 211Right-handed alpha
Helix 13
AB4
A
211 225Right-handed alpha
Helix 14
AB5
A
225 241Right-handed alpha
Helix 15
AB6
A
251 253Right-handed 310
Helix 16
AB7
A
254 266Right-handed alpha
Helix 17
AB8
A
267 271Right-handed 310
Helix 18
AB9
A
273 281Right-handed alpha
Helix 19
AC1
A
285 302Right-handed alpha
Helix 20
AC2
A
306 311Right-handed alpha
Helix 21
AC3
A
311 320Right-handed alpha
Helix 22
AC4
A
321 324Right-handed 310
Helix 23
AC5
A
326 344Right-handed alpha
Helix 24
AC6
A
345 350Right-handed 310
Helix 25
AC7
A
351 359Right-handed alpha
Helix 26
AC8
A
363 381Right-handed alpha
Helix 27
AC9
A
382 385Right-handed 310
Helix 28
AD1
A
386 397Right-handed alpha
Helix 29
AD2
A
401 420Right-handed alpha
Helix 30
AD3
A
426 433Right-handed alpha
Helix 31
AD4
A
435 443Right-handed alpha
Helix 32
AD5
A
444 446Right-handed 310
Helix 33
AD6
A
448 462Right-handed alpha
Helix 34
AD7
A
469 482Right-handed alpha
Helix 35
AD8
A
485 515Right-handed alpha
Helix 36
AD9
A
518 534Right-handed alpha
Helix 37
AE1
A
538 556Right-handed alpha
Helix 38
AE2
A
556 568Right-handed alpha
Helix 39
AE3
A
572 586Right-handed alpha
Helix 40
AE4
A
596 609Right-handed alpha
Helix 41
AE5
A
614 630Right-handed alpha
Helix 42
AE6
A
633 639Right-handed alpha
Helix 43
AE7
A
641 660Right-handed alpha
Helix 44
AE8
A
661 665Right-handed 310
Helix 45
AE9
A
666 678Right-handed alpha
Helix 46
AF1
A
681 696Right-handed alpha
Helix 47
AF2
A
698 703Right-handed alpha
Helix 48
AF3
A
703 721Right-handed alpha
Helix 49
AF4
A
722 737Right-handed alpha
Helix 50
AF5
A
739 755Right-handed alpha
Helix 51
AF6
A
760 762Right-handed 310
Helix 52
AF7
A
763 777Right-handed alpha
Helix 53
AF8
A
781 792Right-handed alpha
Helix 54
AF9
A
793 798Right-handed alpha
Helix 55
AG1
A
814 818Right-handed 310
Helix 56
AG2
A
819 840Right-handed alpha
Helix 57
AG3
A
845 860Right-handed alpha
Helix 58
AG4
A
871 891Right-handed alpha
Helix 59
AG5
A
892 897Right-handed alpha
Helix 60
AG6
A
900 909Right-handed alpha
Helix 61
AG7
A
910 913Right-handed 310
Helix 62
AG8
A
915 932Right-handed alpha
Helix 63
AG9
A
936 949Right-handed 310
Helix 64
AH1
A
951 976Right-handed alpha
Helix 65
AH2
A
979 985Right-handed alpha
Helix 66
AH3
A
987 989Right-handed 310
Helix 67
AH4
A
990 1001Right-handed alpha
Helix 68
AH5
A
1010 1029Right-handed alpha
Helix 69
AH6
A
1035 1048Right-handed alpha
Helix 70
AH7
A
1058 1080Right-handed alpha
Helix 71
AH8
B
27 44Right-handed alpha
Helix 72
AH9
B
52 63Right-handed alpha
Helix 73
AI1
B
65 70Right-handed alpha
Helix 74
AI2
B
73 90Right-handed alpha
Helix 75
AI3
B
99 114Right-handed alpha
Helix 76
AI4
B
115 119Right-handed 310
Helix 77
AI5
B
125 139Right-handed alpha
Helix 78
AI6
B
140 147Right-handed 310
Helix 79
AI7
B
149 165Right-handed alpha
Helix 80
AI8
B
170 187Right-handed alpha
Helix 81
AI9
B
192 201Right-handed alpha
Helix 82
AJ1
B
204 211Right-handed alpha
Helix 83
AJ2
B
211 225Right-handed alpha
Helix 84
AJ3
B
225 241Right-handed alpha
Helix 85
AJ4
B
251 253Right-handed 310
Helix 86
AJ5
B
254 266Right-handed alpha
Helix 87
AJ6
B
267 271Right-handed 310
Helix 88
AJ7
B
273 281Right-handed alpha
Helix 89
AJ8
B
285 301Right-handed alpha
Helix 90
AJ9
B
306 311Right-handed alpha
Helix 91
AK1
B
311 320Right-handed alpha
Helix 92
AK2
B
321 324Right-handed 310
Helix 93
AK3
B
326 344Right-handed alpha
Helix 94
AK4
B
347 350Right-handed 310
Helix 95
AK5
B
351 359Right-handed alpha
Helix 96
AK6
B
363 381Right-handed alpha
Helix 97
AK7
B
382 385Right-handed 310
Helix 98
AK8
B
386 396Right-handed alpha
Helix 99
AK9
B
397 399Right-handed 310
Helix 100
AL1
B
401 420Right-handed alpha
Helix 101
AL2
B
427 432Right-handed alpha
Helix 102
AL3
B
435 442Right-handed alpha
Helix 103
AL4
B
443 446Right-handed 310
Helix 104
AL5
B
448 462Right-handed alpha
Helix 105
AL6
B
469 484Right-handed alpha
Helix 106
AL7
B
485 515Right-handed alpha
Helix 107
AL8
B
520 534Right-handed alpha
Helix 108
AL9
B
545 556Right-handed alpha
Helix 109
AM1
B
557 568Right-handed alpha
Helix 110
AM2
B
572 584Right-handed alpha
Helix 111
AM3
B
597 609Right-handed alpha
Helix 112
AM4
B
614 630Right-handed alpha
Helix 113
AM5
B
632 639Right-handed alpha
Helix 114
AM6
B
641 660Right-handed alpha
Helix 115
AM7
B
661 665Right-handed 310
Helix 116
AM8
B
666 678Right-handed alpha
Helix 117
AM9
B
681 696Right-handed alpha
Helix 118
AN1
B
698 703Right-handed alpha
Helix 119
AN2
B
703 721Right-handed alpha
Helix 120
AN3
B
722 737Right-handed alpha
Helix 121
AN4
B
739 754Right-handed alpha
Helix 122
AN5
B
763 777Right-handed alpha
Helix 123
AN6
B
781 792Right-handed alpha
Helix 124
AN7
B
814 818Right-handed 310
Helix 125
AN8
B
819 840Right-handed alpha
Helix 126
AN9
B
845 860Right-handed alpha
Helix 127
AO1
B
871 890Right-handed alpha
Helix 128
AO2
B
892 897Right-handed alpha
Helix 129
AO3
B
900 909Right-handed alpha
Helix 130
AO4
B
910 913Right-handed 310
Helix 131
AO5
B
915 932Right-handed alpha
Helix 132
AO6
B
936 949Right-handed 310
Helix 133
AO7
B
951 976Right-handed alpha
Helix 134
AO8
B
980 985Right-handed alpha
Helix 135
AO9
B
987 989Right-handed 310
Helix 136
AP1
B
990 1001Right-handed alpha
Helix 137
AP2
B
1010 1029Right-handed alpha
Helix 138
AP3
B
1035 1049Right-handed alpha
Helix 139
AP4
B
1058 1080Right-handed alpha
Helix 140
AP5
B
1113 1119Right-handed 310
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There is 1 sheet (AA1) in PDB entry 5HDT.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1051 1052first strand
Strand 2
B
1098 1099anti-parallel
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