Analysis of interatomic Contacts of Structural Units in PDB entry:
5HJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HJD entry

There are 24 chains in PDB entry 5HJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1ALA 138
C
MET 1ALA 138
E
MET 1ALA 138
G
MET 1ALA 138
K
MET 1ALA 138
N
ALA 2ALA 138
Q
MET 1ALA 138
T
MET 1ALA 138
L
LYS 14ARG 17
L
GLN 19LEU 20
M
LYS 14ARG 17
M
GLN 19LEU 20
B
LYS 14ARG 17
B
GLN 19LEU 20
D
LYS 14ARG 17
D
GLN 19LEU 20
F
ALA 15ARG 17
F
GLN 19GLN 19
H
ALA 15ARG 17
H
GLN 19GLN 19
I
ALA 15ARG 17
I
GLN 19GLN 19
J
ALA 15ARG 17
J
GLN 19LEU 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5HJD. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
43 46Right-handed 310
Helix 2
AA2
A
128 138Right-handed alpha
Helix 3
AA3
C
38 42Right-handed 310
Helix 4
AA4
C
43 46Right-handed 310
Helix 5
AA5
C
128 138Right-handed alpha
Helix 6
AA6
E
43 46Right-handed 310
Helix 7
AA7
E
128 138Right-handed alpha
Helix 8
AA8
G
38 42Right-handed 310
Helix 9
AA9
G
43 46Right-handed 310
Helix 10
AB1
G
128 137Right-handed alpha
Helix 11
AB2
K
43 46Right-handed 310
Helix 12
AB3
K
128 137Right-handed alpha
Helix 13
AB4
N
38 42Right-handed 310
Helix 14
AB5
N
43 46Right-handed 310
Helix 15
AB6
N
128 138Right-handed alpha
Helix 16
AB7
Q
43 46Right-handed 310
Helix 17
AB8
Q
128 138Right-handed alpha
Helix 18
AB9
T
38 42Right-handed 310
Helix 19
AC1
T
43 46Right-handed 310
Helix 20
AC2
T
128 137Right-handed alpha
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There are 22 sheets in PDB entry 5HJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
71 77first strand
Strand 2
A
30 37anti-parallel
Strand 3
A
3 19anti-parallel
Strand 4
C
5 19anti-parallel
Strand 5
C
30 37anti-parallel
Strand 6
C
71 77anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
114 125first strand
Strand 2
A
3 19anti-parallel
Strand 3
C
5 19anti-parallel
Strand 4
C
114 125anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
63 66first strand
Strand 2
A
48 54anti-parallel
Strand 3
A
81 89anti-parallel
Strand 4
A
97 104anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
63 66first strand
Strand 2
C
48 54anti-parallel
Strand 3
C
81 89anti-parallel
Strand 4
C
97 104anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
114 125first strand
Strand 2
G
3 19anti-parallel
Strand 3
G
30 37anti-parallel
Strand 4
G
71 74anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
71 77first strand
Strand 2
E
30 37anti-parallel
Strand 3
E
6 19anti-parallel
Strand 4
G
3 19anti-parallel
Strand 5
G
30 37anti-parallel
Strand 6
G
71 74anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
114 125first strand
Strand 2
G
3 19anti-parallel
Strand 3
E
3 4anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
114 125first strand
Strand 2
E
6 19anti-parallel
Strand 3
E
30 37anti-parallel
Strand 4
E
71 77anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
63 66first strand
Strand 2
E
48 54anti-parallel
Strand 3
E
81 89anti-parallel
Strand 4
E
97 104anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
63 66first strand
Strand 2
G
48 54anti-parallel
Strand 3
G
81 89anti-parallel
Strand 4
G
97 104anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
114 125first strand
Strand 2
N
3 19anti-parallel
Strand 3
N
30 37anti-parallel
Strand 4
N
71 74anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
71 77first strand
Strand 2
K
30 37anti-parallel
Strand 3
K
6 19anti-parallel
Strand 4
N
3 19anti-parallel
Strand 5
N
30 37anti-parallel
Strand 6
N
71 74anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
114 125first strand
Strand 2
N
3 19anti-parallel
Strand 3
K
3 4anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
114 125first strand
Strand 2
K
6 19anti-parallel
Strand 3
K
30 37anti-parallel
Strand 4
K
71 77anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
63 66first strand
Strand 2
K
48 54anti-parallel
Strand 3
K
81 89anti-parallel
Strand 4
K
97 104anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
63 66first strand
Strand 2
N
48 54anti-parallel
Strand 3
N
81 89anti-parallel
Strand 4
N
97 104anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
3 4first strand
Strand 2
T
6 19anti-parallel
Strand 3
T
30 37anti-parallel
Strand 4
T
71 77anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
3 4first strand
Strand 2
T
6 19anti-parallel
Strand 3
T
114 125anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
71 77first strand
Strand 2
Q
30 37anti-parallel
Strand 3
Q
6 19anti-parallel
Strand 4
Q
114 125anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
71 77first strand
Strand 2
Q
30 37anti-parallel
Strand 3
Q
6 19anti-parallel
Strand 4
T
3 4anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
63 66first strand
Strand 2
Q
48 54anti-parallel
Strand 3
Q
81 89anti-parallel
Strand 4
Q
97 104anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
63 66first strand
Strand 2
T
48 54anti-parallel
Strand 3
T
81 89anti-parallel
Strand 4
T
97 104anti-parallel
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