Analysis of interatomic Contacts of Structural Units in PDB entry:
5HNK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HNK entry

There are 4 chains in PDB entry 5HNK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
A 1 C 12
Y
A 1 C 12
A
ARG 20GLN 291
B
ARG 20GLN 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 5HNK. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
27 38Right-handed alpha
Helix 2
AA2
A
43 58Right-handed alpha
Helix 3
AA3
A
72 79Right-handed alpha
Helix 4
AA4
A
83 92Right-handed alpha
Helix 5
AA5
A
94 119Right-handed alpha
Helix 6
AA6
A
128 141Right-handed alpha
Helix 7
AA7
A
142 144Right-handed 310
Helix 8
AA8
A
153 160Right-handed 310
Helix 9
AA9
A
176 178Right-handed 310
Helix 10
AB1
A
179 185Right-handed alpha
Helix 11
AB2
A
188 200Right-handed alpha
Helix 12
AB3
A
201 205Right-handed 310
Helix 13
AB4
A
213 225Right-handed alpha
Helix 14
AB5
A
226 233Right-handed alpha
Helix 15
AB6
A
240 248Right-handed alpha
Helix 16
AB7
A
249 261Right-handed alpha
Helix 17
AB8
A
261 272Right-handed alpha
Helix 18
AB9
A
274 290Right-handed alpha
Helix 19
AC1
B
27 32Right-handed alpha
Helix 20
AC2
B
33 35Right-handed 310
Helix 21
AC3
B
43 58Right-handed alpha
Helix 22
AC4
B
72 79Right-handed alpha
Helix 23
AC5
B
85 92Right-handed alpha
Helix 24
AC6
B
94 117Right-handed alpha
Helix 25
AC7
B
128 141Right-handed alpha
Helix 26
AC8
B
142 144Right-handed 310
Helix 27
AC9
B
153 160Right-handed 310
Helix 28
AD1
B
176 178Right-handed 310
Helix 29
AD2
B
179 185Right-handed alpha
Helix 30
AD3
B
188 200Right-handed alpha
Helix 31
AD4
B
201 205Right-handed 310
Helix 32
AD5
B
213 225Right-handed alpha
Helix 33
AD6
B
226 234Right-handed alpha
Helix 34
AD7
B
240 248Right-handed alpha
Helix 35
AD8
B
249 261Right-handed alpha
Helix 36
AD9
B
261 272Right-handed alpha
Helix 37
AE1
B
274 291Right-handed alpha
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There are 2 sheets in PDB entry 5HNK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
121 122first strand
Strand 2
A
60 66parallel
Strand 3
A
21 26parallel
Strand 4
A
146 150parallel
Strand 5
A
164 167parallel
Strand 6
A
174 175anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
121 122first strand
Strand 2
B
60 66parallel
Strand 3
B
21 26parallel
Strand 4
B
147 150parallel
Strand 5
B
164 167parallel
Strand 6
B
174 175anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il