Analysis of interatomic Contacts of Structural Units in PDB entry:
5HQG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HQG entry

There is 1 chain in PDB entry 5HQG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 391VAL 731
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 5HQG. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
391 400Right-handed alpha
Helix 2
AA2
A
450 454Right-handed alpha
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There are 7 sheets in PDB entry 5HQG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
404 412first strand
Strand 2
A
724 731anti-parallel
Strand 3
A
715 720anti-parallel
Strand 4
A
700 705anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
424 429first strand
Strand 2
A
435 440anti-parallel
Strand 3
A
444 449anti-parallel
Strand 4
A
465 468anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
473 478first strand
Strand 2
A
485 490anti-parallel
Strand 3
A
495 499anti-parallel
Strand 4
A
505 509anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
516 521first strand
Strand 2
A
528 533anti-parallel
Strand 3
A
537 542anti-parallel
Strand 4
A
550 553anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
558 563first strand
Strand 2
A
570 575anti-parallel
Strand 3
A
580 584anti-parallel
Strand 4
A
593 595anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
602 607first strand
Strand 2
A
612 617anti-parallel
Strand 3
A
621 626anti-parallel
Strand 4
A
634 636anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
648 651first strand
Strand 2
A
654 657anti-parallel
Strand 3
A
663 668anti-parallel
Strand 4
A
676 679anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il