Analysis of interatomic Contacts of Structural Units in PDB entry:
5HZH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HZH entry

There is 1 chain in PDB entry 5HZH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3CYS 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 5HZH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 25Right-handed alpha
Helix 2
AA2
A
78 86Right-handed alpha
Helix 3
AA3
A
88 93Right-handed alpha
Helix 4
AA4
A
96 101Right-handed 310
Helix 5
AA5
A
106 119Right-handed alpha
Helix 6
AA6
A
168 196Right-handed alpha
Helix 7
AA7
A
210 214Right-handed 310
Helix 8
AA8
A
216 221Right-handed 310
Helix 9
AA9
A
235 245Right-handed alpha
Helix 10
AB1
A
245 254Right-handed alpha
Helix 11
AB2
A
265 269Right-handed 310
Helix 12
AB3
A
271 280Right-handed alpha
Helix 13
AB4
A
287 298Right-handed alpha
Helix 14
AB5
A
313 327Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5HZH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 45first strand
Strand 2
A
199 207anti-parallel
Strand 3
A
4 10parallel
Strand 4
A
226 232parallel
Strand 5
A
259 264parallel
Strand 6
A
302 305parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
62 65anti-parallel
Strand 3
A
153 163anti-parallel
Strand 4
A
136 147anti-parallel
Strand 5
A
123 130anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il