Analysis of interatomic Contacts of Structural Units in PDB entry:
5HZK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HZK entry

There are 4 chains in PDB entry 5HZK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	GLU 178
B	LEU 1231	LYS 1722
C	THR 3	GLU 178
D	LEU 1231	VAL 1668

There are 53 helices in PDB entry 5HZK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	25	Right-handed alpha
Helix 2	AA2	A	67	71	Right-handed 310
Helix 3	AA3	A	86	96	Right-handed alpha
Helix 4	AA4	A	96	105	Right-handed alpha
Helix 5	AA5	A	116	120	Right-handed 310
Helix 6	AA6	A	122	131	Right-handed alpha
Helix 7	AA7	A	138	149	Right-handed alpha
Helix 8	AA8	A	164	176	Right-handed alpha
Helix 9	AA9	B	1232	1263	Right-handed alpha
Helix 10	AB1	B	1263	1271	Right-handed alpha
Helix 11	AB2	B	1274	1282	Right-handed alpha
Helix 12	AB3	B	1284	1313	Right-handed alpha
Helix 13	AB4	B	1336	1344	Right-handed alpha
Helix 14	AB5	B	1346	1350	Right-handed 310
Helix 15	AB6	B	1354	1359	Right-handed 310
Helix 16	AB7	B	1364	1377	Right-handed alpha
Helix 17	AB8	B	1426	1448	Right-handed alpha
Helix 18	AB9	B	1458	1466	Right-handed alpha
Helix 19	AC1	B	1467	1469	Right-handed 310
Helix 20	AC2	B	1470	1492	Right-handed alpha
Helix 21	AC3	B	1493	1504	Right-handed alpha
Helix 22	AC4	B	1505	1510	Right-handed 310
Helix 23	AC5	B	1513	1518	Right-handed alpha
Helix 24	AC6	B	1518	1527	Right-handed alpha
Helix 25	AC7	B	1527	1537	Right-handed alpha
Helix 26	AC8	B	1545	1581	Right-handed alpha
Helix 27	AC9	B	1698	1721	Right-handed alpha
Helix 28	AD1	C	15	25	Right-handed alpha
Helix 29	AD2	C	67	71	Right-handed 310
Helix 30	AD3	C	86	96	Right-handed alpha
Helix 31	AD4	C	96	105	Right-handed alpha
Helix 32	AD5	C	116	120	Right-handed 310
Helix 33	AD6	C	122	131	Right-handed alpha
Helix 34	AD7	C	138	149	Right-handed alpha
Helix 35	AD8	C	164	177	Right-handed alpha
Helix 36	AD9	D	1232	1263	Right-handed alpha
Helix 37	AE1	D	1263	1271	Right-handed alpha
Helix 38	AE2	D	1274	1282	Right-handed alpha
Helix 39	AE3	D	1284	1313	Right-handed alpha
Helix 40	AE4	D	1336	1344	Right-handed alpha
Helix 41	AE5	D	1354	1359	Right-handed 310
Helix 42	AE6	D	1364	1377	Right-handed alpha
Helix 43	AE7	D	1426	1448	Right-handed alpha
Helix 44	AE8	D	1458	1466	Right-handed alpha
Helix 45	AE9	D	1467	1469	Right-handed 310
Helix 46	AF1	D	1470	1492	Right-handed alpha
Helix 47	AF2	D	1493	1504	Right-handed alpha
Helix 48	AF3	D	1505	1510	Right-handed 310
Helix 49	AF4	D	1513	1518	Right-handed alpha
Helix 50	AF5	D	1519	1527	Right-handed alpha
Helix 51	AF6	D	1527	1537	Right-handed alpha
Helix 52	AF7	D	1545	1581	Right-handed alpha
Helix 53	AF8	D	1698	1722	Right-handed alpha

There are 9 sheets in PDB entry 5HZK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	46	first strand
Strand 2	A	49	57	anti-parallel
Strand 3	A	4	10	parallel
Strand 4	A	77	83	parallel
Strand 5	A	110	115	parallel
Strand 6	A	154	156	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1332	1335	first strand
Strand 2	B	1319	1323	anti-parallel
Strand 3	B	1411	1418	anti-parallel
Strand 4	B	1394	1405	anti-parallel
Strand 5	B	1381	1388	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1332	1335	first strand
Strand 2	B	1319	1323	anti-parallel
Strand 3	B	1411	1418	anti-parallel
Strand 4	B	1394	1405	anti-parallel
Strand 5	B	1420	1421	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1663	1664	first strand
Strand 2	B	1629	1634	anti-parallel
Strand 3	B	1620	1626	anti-parallel
Strand 4	B	1606	1614	anti-parallel
Strand 5	B	1690	1695	anti-parallel
Strand 6	B	1684	1687	anti-parallel
Strand 7	B	1668	1669	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	46	first strand
Strand 2	C	49	57	anti-parallel
Strand 3	C	4	10	parallel
Strand 4	C	77	83	parallel
Strand 5	C	110	115	parallel
Strand 6	C	154	156	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1332	1335	first strand
Strand 2	D	1319	1323	anti-parallel
Strand 3	D	1411	1418	anti-parallel
Strand 4	D	1394	1405	anti-parallel
Strand 5	D	1381	1388	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1332	1335	first strand
Strand 2	D	1319	1323	anti-parallel
Strand 3	D	1411	1418	anti-parallel
Strand 4	D	1394	1405	anti-parallel
Strand 5	D	1420	1421	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1583	1584	first strand
Strand 2	D	1655	1658	parallel
Strand 3	D	1629	1636	anti-parallel
Strand 4	D	1663	1664	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1583	1584	first strand
Strand 2	D	1655	1658	parallel
Strand 3	D	1629	1636	anti-parallel
Strand 4	D	1620	1626	anti-parallel
Strand 5	D	1606	1614	anti-parallel
Strand 6	D	1691	1696	anti-parallel
Strand 7	D	1684	1686	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HZK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HZK