Analysis of interatomic Contacts of Structural Units in PDB entry:
5I5H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5I5H entry

There is 1 chain in PDB entry 5I5H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 246LEU 572
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5I5H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
274 279Right-handed alpha
Helix 2
AA2
A
279 288Right-handed alpha
Helix 3
AA3
A
301 312Right-handed alpha
Helix 4
AA4
A
314 316Right-handed 310
Helix 5
AA5
A
317 324Right-handed alpha
Helix 6
AA6
A
328 337Right-handed alpha
Helix 7
AA7
A
351 357Right-handed alpha
Helix 8
AA8
A
357 362Right-handed alpha
Helix 9
AA9
A
371 386Right-handed alpha
Helix 10
AB1
A
387 390Right-handed 310
Helix 11
AB2
A
408 437Right-handed alpha
Helix 12
AB3
A
456 461Right-handed 310
Helix 13
AB4
A
465 470Right-handed alpha
Helix 14
AB5
A
491 502Right-handed alpha
Helix 15
AB6
A
508 512Right-handed 310
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There are 3 sheets in PDB entry 5I5H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 368first strand
Strand 2
A
340 345parallel
Strand 3
A
393 399parallel
Strand 4
A
262 270parallel
Strand 5
A
444 452parallel
Strand 6
A
473 476anti-parallel
Strand 7
A
290 292anti-parallel
Strand 8
A
483 485parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
489 490parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 531first strand
Strand 2
A
535 539anti-parallel
Strand 3
A
543 548anti-parallel
Strand 4
A
553 557anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il