Analysis of interatomic Contacts of Structural Units in PDB entry:
5IA0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IA0 entry

There are 3 chains in PDB entry 5IA0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 604PRO 889
B
 ALA 600LYS 882
C
 ALA 600ARG 890
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5IA0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
609 611Right-handed 310
Helix 2
AA2
A
653 669Right-handed alpha
Helix 3
AA3
A
700 707Right-handed alpha
Helix 4
AA4
A
712 733Right-handed alpha
Helix 5
AA5
A
741 743Right-handed 310
Helix 6
AA6
A
780 784Right-handed 310
Helix 7
AA7
A
785 792Right-handed alpha
Helix 8
AA8
A
795 812Right-handed alpha
Helix 9
AA9
A
822 832Right-handed alpha
Helix 10
AB1
A
843 854Right-handed alpha
Helix 11
AB2
A
857 861Right-handed 310
Helix 12
AB3
A
863 877Right-handed alpha
Helix 13
AB4
A
878 882Right-handed 310
Helix 14
AB5
A
883 888Right-handed 310
Helix 15
AB6
B
609 611Right-handed 310
Helix 16
AB7
B
653 668Right-handed alpha
Helix 17
AB8
B
699 707Right-handed alpha
Helix 18
AB9
B
712 733Right-handed alpha
Helix 19
AC1
B
741 743Right-handed 310
Helix 20
AC2
B
780 784Right-handed 310
Helix 21
AC3
B
785 792Right-handed alpha
Helix 22
AC4
B
795 812Right-handed alpha
Helix 23
AC5
B
822 832Right-handed alpha
Helix 24
AC6
B
843 854Right-handed alpha
Helix 25
AC7
B
857 861Right-handed 310
Helix 26
AC8
B
863 877Right-handed alpha
Helix 27
AC9
B
878 882Right-handed 310
Helix 28
AD1
C
609 611Right-handed 310
Helix 29
AD2
C
654 668Right-handed alpha
Helix 30
AD3
C
699 707Right-handed alpha
Helix 31
AD4
C
712 733Right-handed alpha
Helix 32
AD5
C
741 743Right-handed 310
Helix 33
AD6
C
780 784Right-handed 310
Helix 34
AD7
C
785 792Right-handed alpha
Helix 35
AD8
C
795 812Right-handed alpha
Helix 36
AD9
C
822 832Right-handed alpha
Helix 37
AE1
C
843 854Right-handed alpha
Helix 38
AE2
C
857 861Right-handed 310
Helix 39
AE3
C
863 877Right-handed alpha
Helix 40
AE4
C
878 882Right-handed 310
Helix 41
AE5
C
883 888Right-handed alpha
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There are 6 sheets in PDB entry 5IA0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
613 621first strand
Strand 2
A
626 632anti-parallel
Strand 3
A
641 647anti-parallel
Strand 4
A
689 693anti-parallel
Strand 5
A
678 682anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
698 699first strand
Strand 2
A
745 747anti-parallel
Strand 3
A
753 755anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
606 607first strand
Strand 2
B
678 682parallel
Strand 3
B
688 693anti-parallel
Strand 4
B
641 648anti-parallel
Strand 5
B
626 632anti-parallel
Strand 6
B
613 621anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
745 747first strand
Strand 2
B
753 755anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
613 621first strand
Strand 2
C
626 633anti-parallel
Strand 3
C
640 647anti-parallel
Strand 4
C
689 693anti-parallel
Strand 5
C
678 682anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
745 747first strand
Strand 2
C
753 755anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il