Analysis of interatomic Contacts of Structural Units in PDB entry:
5IC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IC6 entry

There are 6 chains in PDB entry 5IC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 57GLN 196
B
 LYS 212PHE 301
C
 THR 57GLN 196
D
 LYS 212PHE 301
E
 ASP 1VAL 3
F
 ASP 1VAL 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5IC6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 83Right-handed 310
Helix 2
AA2
A
89 105Right-handed alpha
Helix 3
AA3
A
115 128Right-handed alpha
Helix 4
AA4
A
159 164Right-handed alpha
Helix 5
AA5
A
165 167Right-handed 310
Helix 6
AA6
A
171 175Right-handed 310
Helix 7
AA7
B
240 253Right-handed alpha
Helix 8
AA8
B
257 273Right-handed alpha
Helix 9
AA9
C
79 83Right-handed 310
Helix 10
AB1
C
89 105Right-handed alpha
Helix 11
AB2
C
115 128Right-handed alpha
Helix 12
AB3
C
159 164Right-handed alpha
Helix 13
AB4
C
165 167Right-handed 310
Helix 14
AB5
C
171 175Right-handed 310
Helix 15
AB6
D
240 253Right-handed alpha
Helix 16
AB7
D
257 273Right-handed alpha
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There are 6 sheets in PDB entry 5IC6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 112first strand
Strand 2
A
66 74parallel
Strand 3
A
134 142parallel
Strand 4
A
179 184parallel
Strand 5
B
219 223parallel
Strand 6
B
290 293anti-parallel
Strand 7
D
290 293anti-parallel
Strand 8
D
219 223anti-parallel
Strand 9
C
179 184parallel
Strand 10
C
134 142parallel
Strand 11
C
66 74parallel
Strand 12
C
107 112parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
149 152anti-parallel
Strand 3
A
155 158anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 239first strand
Strand 2
B
232 234anti-parallel
Strand 3
E
2 3anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 146first strand
Strand 2
C
149 152anti-parallel
Strand 3
C
155 158anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 190first strand
Strand 2
D
228 229parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
238 239first strand
Strand 2
D
232 234anti-parallel
Strand 3
F
2 3anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il