Analysis of interatomic Contacts of Structural Units in PDB entry:
5ICN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ICN entry

There are 4 chains in PDB entry 5ICN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 165LYS 340
B
ARG 8ALA 376
C
GLY 14ALA 15
C
ARG 17HIS 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5ICN. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
190 193Right-handed 310
Helix 2
AA2
A
206 227Right-handed alpha
Helix 3
AA3
A
238 246Right-handed alpha
Helix 4
AA4
A
247 261Right-handed alpha
Helix 5
AA5
A
264 273Right-handed alpha
Helix 6
AA6
A
283 288Right-handed alpha
Helix 7
AA7
A
289 304Right-handed alpha
Helix 8
AA8
A
306 314Right-handed alpha
Helix 9
AA9
A
319 331Right-handed alpha
Helix 10
AB1
B
16 21Right-handed 310
Helix 11
AB2
B
32 45Right-handed alpha
Helix 12
AB3
B
47 51Right-handed 310
Helix 13
AB4
B
60 65Right-handed alpha
Helix 14
AB5
B
69 79Right-handed alpha
Helix 15
AB6
B
83 94Right-handed alpha
Helix 16
AB7
B
105 126Right-handed alpha
Helix 17
AB8
B
154 164Right-handed alpha
Helix 18
AB9
B
180 187Right-handed alpha
Helix 19
AC1
B
216 220Right-handed 310
Helix 20
AC2
B
233 253Right-handed alpha
Helix 21
AC3
B
277 291Right-handed alpha
Helix 22
AC4
B
304 320Right-handed alpha
Helix 23
AC5
B
333 337Right-handed 310
Helix 24
AC6
B
355 372Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5ICN.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
195 199first strand
Strand 2
B
52 56anti-parallel
Strand 3
B
11 14parallel
Strand 4
B
131 134parallel
Strand 5
B
295 298parallel
Strand 6
B
256 260parallel
Strand 7
B
170 174parallel
Strand 8
B
193 200parallel
Strand 9
B
223 228parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il