Analysis of interatomic Contacts of Structural Units in PDB entry:
5IFM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5IFM entry

There are 5 chains in PDB entry 5IFM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 53	GLU 306
B	GLY 54	MET 312
C	GLU 53	GLN 308
D	GLY 52	GLN 308
E	GLU 53	ARG 256

There are112 helices in PDB entry 5IFM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	73	Right-handed 310
Helix 2	AA2	A	86	94	Right-handed alpha
Helix 3	AA3	A	95	98	Right-handed 310
Helix 4	AA4	A	118	130	Right-handed alpha
Helix 5	AA5	A	160	169	Right-handed alpha
Helix 6	AA6	A	197	211	Right-handed alpha
Helix 7	AA7	A	237	241	Right-handed 310
Helix 8	AA8	A	244	251	Right-handed alpha
Helix 9	AA9	A	262	304	Right-handed alpha
Helix 10	AB1	B	71	73	Right-handed 310
Helix 11	AB2	B	86	95	Right-handed alpha
Helix 12	AB3	B	96	98	Right-handed 310
Helix 13	AB4	B	118	130	Right-handed alpha
Helix 14	AB5	B	160	169	Right-handed alpha
Helix 15	AB6	B	197	211	Right-handed alpha
Helix 16	AB7	B	237	241	Right-handed 310
Helix 17	AB8	B	244	251	Right-handed alpha
Helix 18	AB9	B	262	305	Right-handed alpha
Helix 19	AC1	B	307	312	Right-handed alpha
Helix 20	AC2	C	71	73	Right-handed 310
Helix 21	AC3	C	86	94	Right-handed alpha
Helix 22	AC4	C	95	98	Right-handed 310
Helix 23	AC5	C	118	130	Right-handed alpha
Helix 24	AC6	C	160	169	Right-handed alpha
Helix 25	AC7	C	170	172	Right-handed 310
Helix 26	AC8	C	197	211	Right-handed alpha
Helix 27	AC9	C	237	241	Right-handed 310
Helix 28	AD1	C	244	251	Right-handed alpha
Helix 29	AD2	C	262	308	Right-handed alpha
Helix 30	AD3	D	86	94	Right-handed alpha
Helix 31	AD4	D	95	98	Right-handed 310
Helix 32	AD5	D	118	130	Right-handed alpha
Helix 33	AD6	D	160	169	Right-handed alpha
Helix 34	AD7	D	170	172	Right-handed 310
Helix 35	AD8	D	197	211	Right-handed alpha
Helix 36	AD9	D	237	241	Right-handed 310
Helix 37	AE1	D	244	251	Right-handed alpha
Helix 38	AE2	D	262	306	Right-handed alpha
Helix 39	AE3	E	71	73	Right-handed 310
Helix 40	AE4	E	86	94	Right-handed alpha
Helix 41	AE5	E	95	98	Right-handed 310
Helix 42	AE6	E	118	130	Right-handed alpha
Helix 43	AE7	E	160	169	Right-handed alpha
Helix 44	AE8	E	170	172	Right-handed 310
Helix 45	AE9	E	197	211	Right-handed alpha
Helix 46	AF1	E	237	241	Right-handed 310
Helix 47	AF2	E	244	251	Right-handed alpha
Helix 48	AF3	E	262	308	Right-handed alpha
Helix 49	AF4	F	86	94	Right-handed alpha
Helix 50	AF5	F	95	98	Right-handed 310
Helix 51	AF6	F	118	130	Right-handed alpha
Helix 52	AF7	F	160	169	Right-handed alpha
Helix 53	AF8	F	170	172	Right-handed 310
Helix 54	AF9	F	197	211	Right-handed alpha
Helix 55	AG1	F	237	241	Right-handed 310
Helix 56	AG2	F	244	251	Right-handed alpha
Helix 57	AG3	F	262	308	Right-handed alpha
Helix 58	AG4	G	71	73	Right-handed 310
Helix 59	AG5	G	86	94	Right-handed alpha
Helix 60	AG6	G	95	98	Right-handed 310
Helix 61	AG7	G	118	130	Right-handed alpha
Helix 62	AG8	G	160	169	Right-handed alpha
Helix 63	AG9	G	170	172	Right-handed 310
Helix 64	AH1	G	197	211	Right-handed alpha
Helix 65	AH2	G	237	241	Right-handed 310
Helix 66	AH3	G	244	251	Right-handed alpha
Helix 67	AH4	G	262	307	Right-handed alpha
Helix 68	AH5	H	71	73	Right-handed 310
Helix 69	AH6	H	86	94	Right-handed alpha
Helix 70	AH7	H	118	130	Right-handed alpha
Helix 71	AH8	H	160	169	Right-handed alpha
Helix 72	AH9	H	170	172	Right-handed 310
Helix 73	AI1	H	197	211	Right-handed alpha
Helix 74	AI2	H	237	241	Right-handed 310
Helix 75	AI3	H	244	251	Right-handed alpha
Helix 76	AI4	H	262	309	Right-handed alpha
Helix 77	AI5	I	71	73	Right-handed 310
Helix 78	AI6	I	86	94	Right-handed alpha
Helix 79	AI7	I	95	98	Right-handed 310
Helix 80	AI8	I	118	130	Right-handed alpha
Helix 81	AI9	I	160	169	Right-handed alpha
Helix 82	AJ1	I	197	211	Right-handed alpha
Helix 83	AJ2	I	237	241	Right-handed 310
Helix 84	AJ3	I	244	251	Right-handed alpha
Helix 85	AJ4	I	262	306	Right-handed alpha
Helix 86	AJ5	J	71	73	Right-handed 310
Helix 87	AJ6	J	86	94	Right-handed alpha
Helix 88	AJ7	J	95	98	Right-handed 310
Helix 89	AJ8	J	118	130	Right-handed alpha
Helix 90	AJ9	J	160	169	Right-handed alpha
Helix 91	AK1	J	170	172	Right-handed 310
Helix 92	AK2	J	197	211	Right-handed alpha
Helix 93	AK3	J	237	241	Right-handed 310
Helix 94	AK4	J	244	251	Right-handed alpha
Helix 95	AK5	J	262	309	Right-handed alpha
Helix 96	AK6	J	310	312	Right-handed 310
Helix 97	AK7	K	86	94	Right-handed alpha
Helix 98	AK8	K	95	98	Right-handed 310
Helix 99	AK9	K	118	130	Right-handed alpha
Helix 100	AL1	K	160	169	Right-handed alpha
Helix 101	AL2	K	197	211	Right-handed alpha
Helix 102	AL3	K	237	241	Right-handed 310
Helix 103	AL4	K	244	251	Right-handed alpha
Helix 104	AL5	K	262	309	Right-handed alpha
Helix 105	AL6	L	86	94	Right-handed alpha
Helix 106	AL7	L	95	98	Right-handed 310
Helix 107	AL8	L	118	130	Right-handed alpha
Helix 108	AL9	L	160	169	Right-handed alpha
Helix 109	AM1	L	197	211	Right-handed alpha
Helix 110	AM2	L	237	241	Right-handed 310
Helix 111	AM3	L	244	251	Right-handed alpha
Helix 112	AM4	L	262	305	Right-handed alpha

There are 53 sheets in PDB entry 5IFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	59	first strand
Strand 2	B	55	59	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	105	first strand
Strand 2	A	111	116	anti-parallel
Strand 3	A	75	79	anti-parallel
Strand 4	A	140	143	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	A	137	138	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	226	first strand
Strand 2	A	149	153	anti-parallel
Strand 3	A	187	195	anti-parallel
Strand 4	A	174	182	anti-parallel
Strand 5	B	230	231	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	B	256	257	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	B	174	182	anti-parallel
Strand 3	B	187	195	anti-parallel
Strand 4	B	149	153	anti-parallel
Strand 5	B	223	226	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	257	first strand
Strand 2	B	213	214	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	75	79	anti-parallel
Strand 4	B	140	143	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	134	first strand
Strand 2	B	137	138	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	59	first strand
Strand 2	D	55	59	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	105	first strand
Strand 2	C	111	116	anti-parallel
Strand 3	C	75	79	anti-parallel
Strand 4	C	140	143	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	134	first strand
Strand 2	C	137	138	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	226	first strand
Strand 2	C	149	153	anti-parallel
Strand 3	C	187	195	anti-parallel
Strand 4	C	174	182	anti-parallel
Strand 5	D	230	231	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	214	first strand
Strand 2	D	256	257	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	257	first strand
Strand 2	D	213	214	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	105	first strand
Strand 2	D	111	116	anti-parallel
Strand 3	D	75	79	anti-parallel
Strand 4	D	140	143	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	134	first strand
Strand 2	D	137	138	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	181	first strand
Strand 2	D	187	195	anti-parallel
Strand 3	D	149	153	anti-parallel
Strand 4	D	223	226	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	59	first strand
Strand 2	F	55	59	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	105	first strand
Strand 2	E	111	116	anti-parallel
Strand 3	E	75	79	anti-parallel
Strand 4	E	140	143	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	134	first strand
Strand 2	E	137	138	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	181	first strand
Strand 2	E	187	195	anti-parallel
Strand 3	E	149	153	anti-parallel
Strand 4	E	223	226	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	213	214	first strand
Strand 2	F	256	257	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	230	231	first strand
Strand 2	F	174	182	anti-parallel
Strand 3	F	187	195	anti-parallel
Strand 4	F	149	153	anti-parallel
Strand 5	F	223	226	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	256	257	first strand
Strand 2	F	213	214	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	105	first strand
Strand 2	F	111	116	anti-parallel
Strand 3	F	75	79	anti-parallel
Strand 4	F	140	143	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	134	first strand
Strand 2	F	137	138	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	59	first strand
Strand 2	H	55	58	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	100	105	first strand
Strand 2	G	111	116	anti-parallel
Strand 3	G	75	79	anti-parallel
Strand 4	G	140	143	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	133	134	first strand
Strand 2	G	137	138	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	174	181	first strand
Strand 2	G	187	195	anti-parallel
Strand 3	G	149	153	anti-parallel
Strand 4	G	223	226	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	213	214	first strand
Strand 2	H	256	257	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	256	257	first strand
Strand 2	H	213	214	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	106	first strand
Strand 2	H	111	116	anti-parallel
Strand 3	H	75	79	anti-parallel
Strand 4	H	140	143	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	134	first strand
Strand 2	H	137	138	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	174	181	first strand
Strand 2	H	187	195	anti-parallel
Strand 3	H	149	153	anti-parallel
Strand 4	H	223	226	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	59	first strand
Strand 2	J	55	58	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	100	105	first strand
Strand 2	I	111	116	anti-parallel
Strand 3	I	75	79	anti-parallel
Strand 4	I	140	143	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	133	134	first strand
Strand 2	I	137	138	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	223	226	first strand
Strand 2	I	149	153	anti-parallel
Strand 3	I	187	195	anti-parallel
Strand 4	I	174	182	anti-parallel
Strand 5	J	230	231	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	213	214	first strand
Strand 2	J	256	257	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	256	257	first strand
Strand 2	J	213	214	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	100	106	first strand
Strand 2	J	111	116	anti-parallel
Strand 3	J	75	79	anti-parallel
Strand 4	J	140	143	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	133	134	first strand
Strand 2	J	137	138	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	174	181	first strand
Strand 2	J	187	195	anti-parallel
Strand 3	J	149	153	anti-parallel
Strand 4	J	223	226	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	55	59	first strand
Strand 2	L	55	59	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	100	105	first strand
Strand 2	K	112	116	anti-parallel
Strand 3	K	75	79	anti-parallel
Strand 4	K	140	143	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	133	134	first strand
Strand 2	K	137	138	anti-parallel

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There are 5 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	223	226	first strand
Strand 2	K	149	153	anti-parallel
Strand 3	K	187	195	anti-parallel
Strand 4	K	174	182	anti-parallel
Strand 5	L	230	231	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	213	214	first strand
Strand 2	L	256	257	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	256	257	first strand
Strand 2	L	213	214	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	100	106	first strand
Strand 2	L	111	116	anti-parallel
Strand 3	L	75	79	anti-parallel
Strand 4	L	140	143	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	174	181	first strand
Strand 2	L	187	195	anti-parallel
Strand 3	L	149	153	anti-parallel
Strand 4	L	223	226	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5IFM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5IFM