Analysis of interatomic Contacts of Structural Units in PDB entry:
5IJ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IJ7 entry

There are 6 chains in PDB entry 5IJ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 9ALA 733
B
GLU 9ALA 733
E
SER 67LEU 426
F
SER 67LEU 426
S
ASN 562LEU 688
T
HIS 561LEU 688
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 5IJ7. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
11 62Right-handed alpha
Helix 2
AA2
A
167 198Right-handed alpha
Helix 3
AA3
A
220 231Right-handed alpha
Helix 4
AA4
A
232 235Right-handed 310
Helix 5
AA5
A
236 245Right-handed alpha
Helix 6
AA6
A
273 284Right-handed alpha
Helix 7
AA7
A
302 307Right-handed 310
Helix 8
AA8
A
433 444Right-handed alpha
Helix 9
AA9
A
450 459Right-handed alpha
Helix 10
AB1
A
462 472Right-handed alpha
Helix 11
AB2
A
534 539Right-handed alpha
Helix 12
AB3
A
571 576Right-handed alpha
Helix 13
AB4
A
604 609Right-handed alpha
Helix 14
AB5
A
648 661Right-handed alpha
Helix 15
AB6
A
683 687Right-handed 310
Helix 16
AB7
A
725 731Right-handed alpha
Helix 17
AB8
B
11 62Right-handed alpha
Helix 18
AB9
B
167 197Right-handed alpha
Helix 19
AC1
B
220 231Right-handed alpha
Helix 20
AC2
B
236 248Right-handed alpha
Helix 21
AC3
B
273 284Right-handed alpha
Helix 22
AC4
B
302 307Right-handed 310
Helix 23
AC5
B
433 447Right-handed alpha
Helix 24
AC6
B
450 459Right-handed alpha
Helix 25
AC7
B
462 472Right-handed alpha
Helix 26
AC8
B
534 539Right-handed alpha
Helix 27
AC9
B
571 576Right-handed alpha
Helix 28
AD1
B
604 609Right-handed alpha
Helix 29
AD2
B
648 661Right-handed alpha
Helix 30
AD3
B
683 687Right-handed 310
Helix 31
AD4
B
725 731Right-handed alpha
Helix 32
AD5
E
253 266Right-handed alpha
Helix 33
AD6
E
325 329Right-handed 310
Helix 34
AD7
F
253 266Right-handed alpha
Helix 35
AD8
F
325 329Right-handed 310
Helix 36
AD9
S
575 579Right-handed 310
Helix 37
AE1
S
589 602Right-handed alpha
Helix 38
AE2
S
607 625Right-handed alpha
Helix 39
AE3
S
628 630Right-handed 310
Helix 40
AE4
S
631 650Right-handed alpha
Helix 41
AE5
S
652 666Right-handed alpha
Helix 42
AE6
S
670 687Right-handed alpha
Helix 43
AE7
T
575 579Right-handed 310
Helix 44
AE8
T
589 602Right-handed alpha
Helix 45
AE9
T
607 625Right-handed alpha
Helix 46
AF1
T
628 630Right-handed 310
Helix 47
AF2
T
631 650Right-handed alpha
Helix 48
AF3
T
652 666Right-handed alpha
Helix 49
AF4
T
670 687Right-handed alpha
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There are 26 sheets in PDB entry 5IJ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
94 97first strand
Strand 2
A
82 87anti-parallel
Strand 3
E
68 76anti-parallel
Strand 4
E
419 425anti-parallel
Strand 5
E
410 415anti-parallel
Strand 6
E
399 404anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
99 101first strand
Strand 2
E
118 126parallel
Strand 3
E
106 112anti-parallel
Strand 4
E
98 103anti-parallel
Strand 5
E
82 87anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
114 115first strand
Strand 2
A
673 681parallel
Strand 3
A
643 647anti-parallel
Strand 4
A
120 121parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
114 115first strand
Strand 2
A
673 681parallel
Strand 3
A
666 668anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
285 286first strand
Strand 2
A
291 292anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
614 618first strand
Strand 2
A
624 628anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
637 640first strand
Strand 2
A
705 712anti-parallel
Strand 3
A
695 702anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
688 689first strand
Strand 2
A
723 724parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
94 97first strand
Strand 2
B
82 87anti-parallel
Strand 3
F
68 76anti-parallel
Strand 4
F
419 425anti-parallel
Strand 5
F
410 415anti-parallel
Strand 6
F
399 404anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
99 101first strand
Strand 2
F
118 126parallel
Strand 3
F
106 112anti-parallel
Strand 4
F
98 103anti-parallel
Strand 5
F
82 87anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
114 115first strand
Strand 2
B
673 681parallel
Strand 3
B
643 647anti-parallel
Strand 4
B
120 121parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
114 115first strand
Strand 2
B
673 681parallel
Strand 3
B
666 668anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
285 286first strand
Strand 2
B
291 292anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
614 618first strand
Strand 2
B
624 628anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
637 640first strand
Strand 2
B
705 712anti-parallel
Strand 3
B
695 702anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
688 689first strand
Strand 2
B
723 724parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
133 140first strand
Strand 2
E
147 153anti-parallel
Strand 3
E
158 162anti-parallel
Strand 4
E
167 172anti-parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
179 184first strand
Strand 2
E
191 196anti-parallel
Strand 3
E
201 205anti-parallel
Strand 4
E
210 215anti-parallel
Strand 5
E
278 280parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
225 230first strand
Strand 2
E
236 241anti-parallel
Strand 3
E
246 250anti-parallel
Strand 4
E
285 287anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
297 301first strand
Strand 2
E
304 308anti-parallel
Strand 3
E
313 319anti-parallel
Strand 4
E
336 343anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
355 356first strand
Strand 2
E
362 366anti-parallel
Strand 3
E
372 376anti-parallel
Strand 4
E
387 390anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
133 140first strand
Strand 2
F
147 153anti-parallel
Strand 3
F
158 162anti-parallel
Strand 4
F
167 172anti-parallel
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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
179 184first strand
Strand 2
F
191 196anti-parallel
Strand 3
F
201 205anti-parallel
Strand 4
F
210 215anti-parallel
Strand 5
F
278 280parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
225 230first strand
Strand 2
F
236 241anti-parallel
Strand 3
F
246 250anti-parallel
Strand 4
F
285 287anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
297 301first strand
Strand 2
F
304 308anti-parallel
Strand 3
F
313 319anti-parallel
Strand 4
F
336 343anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
355 356first strand
Strand 2
F
362 366anti-parallel
Strand 3
F
372 376anti-parallel
Strand 4
F
387 390anti-parallel
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