Analysis of interatomic Contacts of Structural Units in PDB entry:
5IJ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5IJ8 entry

There are 6 chains in PDB entry 5IJ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 9	ALA 733
B	GLU 9	ALA 733
E	PHE 68	ARG 425
F	PHE 68	LEU 426
S	HIS 561	LEU 688
T	HIS 561	LEU 688

There are 53 helices in PDB entry 5IJ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	62	Right-handed alpha
Helix 2	AA2	A	167	196	Right-handed alpha
Helix 3	AA3	A	220	231	Right-handed alpha
Helix 4	AA4	A	232	235	Right-handed 310
Helix 5	AA5	A	236	245	Right-handed alpha
Helix 6	AA6	A	273	278	Right-handed alpha
Helix 7	AA7	A	278	284	Right-handed alpha
Helix 8	AA8	A	433	447	Right-handed alpha
Helix 9	AA9	A	450	459	Right-handed alpha
Helix 10	AB1	A	462	472	Right-handed alpha
Helix 11	AB2	A	534	539	Right-handed alpha
Helix 12	AB3	A	571	576	Right-handed alpha
Helix 13	AB4	A	604	609	Right-handed alpha
Helix 14	AB5	A	648	661	Right-handed alpha
Helix 15	AB6	A	682	687	Right-handed 310
Helix 16	AB7	A	725	730	Right-handed 310
Helix 17	AB8	B	11	62	Right-handed alpha
Helix 18	AB9	B	167	197	Right-handed alpha
Helix 19	AC1	B	220	231	Right-handed alpha
Helix 20	AC2	B	236	248	Right-handed alpha
Helix 21	AC3	B	273	278	Right-handed alpha
Helix 22	AC4	B	278	284	Right-handed alpha
Helix 23	AC5	B	434	447	Right-handed alpha
Helix 24	AC6	B	450	459	Right-handed alpha
Helix 25	AC7	B	462	472	Right-handed alpha
Helix 26	AC8	B	534	540	Right-handed alpha
Helix 27	AC9	B	571	576	Right-handed alpha
Helix 28	AD1	B	604	609	Right-handed alpha
Helix 29	AD2	B	648	661	Right-handed alpha
Helix 30	AD3	B	682	687	Right-handed 310
Helix 31	AD4	B	725	730	Right-handed 310
Helix 32	AD5	E	253	266	Right-handed alpha
Helix 33	AD6	E	267	271	Right-handed 310
Helix 34	AD7	E	325	329	Right-handed 310
Helix 35	AD8	F	253	266	Right-handed alpha
Helix 36	AD9	F	267	271	Right-handed 310
Helix 37	AE1	F	325	329	Right-handed 310
Helix 38	AE2	S	575	579	Right-handed 310
Helix 39	AE3	S	589	602	Right-handed alpha
Helix 40	AE4	S	607	625	Right-handed alpha
Helix 41	AE5	S	628	630	Right-handed 310
Helix 42	AE6	S	631	643	Right-handed alpha
Helix 43	AE7	S	643	650	Right-handed alpha
Helix 44	AE8	S	652	666	Right-handed alpha
Helix 45	AE9	S	670	686	Right-handed alpha
Helix 46	AF1	T	575	579	Right-handed 310
Helix 47	AF2	T	589	602	Right-handed alpha
Helix 48	AF3	T	607	625	Right-handed alpha
Helix 49	AF4	T	628	630	Right-handed 310
Helix 50	AF5	T	631	643	Right-handed alpha
Helix 51	AF6	T	643	650	Right-handed alpha
Helix 52	AF7	T	652	666	Right-handed alpha
Helix 53	AF8	T	670	686	Right-handed alpha

There are 24 sheets in PDB entry 5IJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	82	87	first strand
Strand 2	F	97	103	anti-parallel
Strand 3	F	106	112	anti-parallel
Strand 4	F	118	126	anti-parallel
Strand 5	A	94	101	parallel
Strand 6	A	82	87	anti-parallel
Strand 7	F	69	76	anti-parallel
Strand 8	F	419	424	anti-parallel
Strand 9	F	410	415	anti-parallel
Strand 10	F	399	404	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	680	681	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	644	647	parallel
Strand 3	A	673	676	anti-parallel
Strand 4	A	666	668	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	286	first strand
Strand 2	A	291	292	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	614	618	first strand
Strand 2	A	624	628	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	641	first strand
Strand 2	A	705	712	anti-parallel
Strand 3	A	695	702	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	688	689	first strand
Strand 2	A	723	724	parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	87	first strand
Strand 2	E	97	103	anti-parallel
Strand 3	E	106	112	anti-parallel
Strand 4	E	118	126	anti-parallel
Strand 5	B	94	101	parallel
Strand 6	B	82	87	anti-parallel
Strand 7	E	69	76	anti-parallel
Strand 8	E	419	424	anti-parallel
Strand 9	E	410	415	anti-parallel
Strand 10	E	399	404	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	680	681	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	644	647	parallel
Strand 3	B	673	676	anti-parallel
Strand 4	B	666	668	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	286	first strand
Strand 2	B	291	292	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	614	618	first strand
Strand 2	B	624	628	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	637	641	first strand
Strand 2	B	705	712	anti-parallel
Strand 3	B	695	702	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	688	689	first strand
Strand 2	B	723	724	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	140	first strand
Strand 2	E	147	153	anti-parallel
Strand 3	E	157	162	anti-parallel
Strand 4	E	167	173	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	179	184	first strand
Strand 2	E	191	196	anti-parallel
Strand 3	E	201	205	anti-parallel
Strand 4	E	210	215	anti-parallel
Strand 5	E	278	280	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	225	230	first strand
Strand 2	E	236	241	anti-parallel
Strand 3	E	246	250	anti-parallel
Strand 4	E	285	287	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	297	301	first strand
Strand 2	E	304	308	anti-parallel
Strand 3	E	313	319	anti-parallel
Strand 4	E	336	343	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	355	356	first strand
Strand 2	E	362	366	anti-parallel
Strand 3	E	372	376	anti-parallel
Strand 4	E	387	390	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	140	first strand
Strand 2	F	147	153	anti-parallel
Strand 3	F	157	162	anti-parallel
Strand 4	F	167	173	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	184	first strand
Strand 2	F	191	196	anti-parallel
Strand 3	F	201	205	anti-parallel
Strand 4	F	210	215	anti-parallel
Strand 5	F	278	280	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	225	230	first strand
Strand 2	F	236	241	anti-parallel
Strand 3	F	246	250	anti-parallel
Strand 4	F	285	287	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	297	301	first strand
Strand 2	F	304	308	anti-parallel
Strand 3	F	313	319	anti-parallel
Strand 4	F	336	343	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	355	356	first strand
Strand 2	F	362	366	anti-parallel
Strand 3	F	372	376	anti-parallel
Strand 4	F	387	390	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5IJ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5IJ8