Analysis of interatomic Contacts of Structural Units in PDB entry:
5IKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IKP entry

There is 1 chain in PDB entry 5IKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 21ILE 839
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5IKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 38Right-handed alpha
Helix 2
AA2
A
47 77Right-handed alpha
Helix 3
AA3
A
94 101Right-handed alpha
Helix 4
AA4
A
104 114Right-handed alpha
Helix 5
AA5
A
118 126Right-handed alpha
Helix 6
AA6
A
134 150Right-handed alpha
Helix 7
AA7
A
194 197Right-handed 310
Helix 8
AA8
A
258 274Right-handed alpha
Helix 9
AA9
A
288 313Right-handed alpha
Helix 10
AB1
A
328 332Right-handed alpha
Helix 11
AB2
A
344 356Right-handed alpha
Helix 12
AB3
A
360 371Right-handed alpha
Helix 13
AB4
A
389 396Right-handed alpha
Helix 14
AB5
A
396 418Right-handed alpha
Helix 15
AB6
A
421 429Right-handed alpha
Helix 16
AB7
A
441 448Right-handed alpha
Helix 17
AB8
A
456 466Right-handed alpha
Helix 18
AB9
A
468 475Right-handed alpha
Helix 19
AC1
A
496 508Right-handed alpha
Helix 20
AC2
A
509 513Right-handed 310
Helix 21
AC3
A
514 526Right-handed 310
Helix 22
AC4
A
527 554Right-handed alpha
Helix 23
AC5
A
571 574Right-handed 310
Helix 24
AC6
A
575 593Right-handed alpha
Helix 25
AC7
A
613 631Right-handed alpha
Helix 26
AC8
A
649 657Right-handed alpha
Helix 27
AC9
A
658 660Right-handed 310
Helix 28
AD1
A
676 684Right-handed alpha
Helix 29
AD2
A
694 704Right-handed alpha
Helix 30
AD3
A
705 708Right-handed 310
Helix 31
AD4
A
715 725Right-handed alpha
Helix 32
AD5
A
728 733Right-handed alpha
Helix 33
AD6
A
736 748Right-handed alpha
Helix 34
AD7
A
758 767Right-handed alpha
Helix 35
AD8
A
773 775Right-handed 310
Helix 36
AD9
A
776 793Right-handed alpha
Helix 37
AE1
A
793 808Right-handed alpha
Helix 38
AE2
A
809 811Right-handed 310
Helix 39
AE3
A
812 824Right-handed alpha
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There are 6 sheets in PDB entry 5IKP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
219 231anti-parallel
Strand 3
A
198 202anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
219 231anti-parallel
Strand 3
A
238 247anti-parallel
Strand 4
A
154 159parallel
Strand 5
A
81 85parallel
Strand 6
A
333 338parallel
Strand 7
A
372 376parallel
Strand 8
A
451 454parallel
Strand 9
A
479 481parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 171first strand
Strand 2
A
174 178anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 208first strand
Strand 2
A
213 216anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 388first strand
Strand 2
A
438 440anti-parallel
Strand 3
A
431 432anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
642 645first strand
Strand 2
A
603 606parallel
Strand 3
A
564 567parallel
Strand 4
A
662 665parallel
Strand 5
A
687 692parallel
Strand 6
A
709 714parallel
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