Analysis of interatomic Contacts of Structural Units in PDB entry:
5IMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IMX entry

There is 1 chain in PDB entry 5IMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 1109GLU 1400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5IMX. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
1163 1174Right-handed alpha
Helix 2
AA2
A
1203 1211Right-handed alpha
Helix 3
AA3
A
1222 1243Right-handed alpha
Helix 4
AA4
A
1251 1253Right-handed 310
Helix 5
AA5
A
1292 1296Right-handed 310
Helix 6
AA6
A
1297 1304Right-handed alpha
Helix 7
AA7
A
1307 1324Right-handed alpha
Helix 8
AA8
A
1334 1344Right-handed alpha
Helix 9
AA9
A
1355 1366Right-handed alpha
Helix 10
AB1
A
1369 1373Right-handed 310
Helix 11
AB2
A
1375 1388Right-handed alpha
Helix 12
AB3
A
1389 1394Right-handed alpha
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There are 2 sheets in PDB entry 5IMX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1117 1124first strand
Strand 2
A
1129 1134anti-parallel
Strand 3
A
1147 1152anti-parallel
Strand 4
A
1192 1197anti-parallel
Strand 5
A
1182 1186anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1255 1257first strand
Strand 2
A
1266 1268anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il