Analysis of interatomic Contacts of Structural Units in PDB entry:
5ISO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ISO entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 5ISO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 9	ALA 551
B	ALA 77	ARG 107
B	HIS 109	ILE 270
E	SER 27	LEU 324
C	GLY 9	PRO 367

There are 78 helices in PDB entry 5ISO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	55	Right-handed alpha
Helix 2	AA2	A	57	71	Right-handed alpha
Helix 3	AA3	A	100	109	Right-handed alpha
Helix 4	AA4	A	112	133	Right-handed alpha
Helix 5	AA5	A	176	180	Right-handed 310
Helix 6	AA6	A	181	187	Right-handed alpha
Helix 7	AA7	A	192	209	Right-handed alpha
Helix 8	AA8	A	218	229	Right-handed alpha
Helix 9	AA9	A	238	249	Right-handed alpha
Helix 10	AB1	A	258	265	Right-handed alpha
Helix 11	AB2	A	265	270	Right-handed alpha
Helix 12	AB3	A	282	287	Right-handed alpha
Helix 13	AB4	A	289	300	Right-handed alpha
Helix 14	AB5	A	303	313	Right-handed alpha
Helix 15	AB6	A	318	336	Right-handed alpha
Helix 16	AB7	A	337	342	Right-handed alpha
Helix 17	AB8	A	411	427	Right-handed alpha
Helix 18	AB9	A	534	550	Right-handed alpha
Helix 19	AC1	B	97	99	Right-handed 310
Helix 20	AC2	B	156	160	Right-handed 310
Helix 21	AC3	B	161	177	Right-handed alpha
Helix 22	AC4	B	207	212	Right-handed 310
Helix 23	AC5	B	213	217	Right-handed 310
Helix 24	AC6	B	232	236	Right-handed 310
Helix 25	AC7	E	28	36	Right-handed alpha
Helix 26	AC8	E	37	42	Right-handed 310
Helix 27	AC9	E	56	68	Right-handed alpha
Helix 28	AD1	E	88	99	Right-handed alpha
Helix 29	AD2	E	106	112	Right-handed alpha
Helix 30	AD3	E	113	123	Right-handed alpha
Helix 31	AD4	E	137	149	Right-handed alpha
Helix 32	AD5	E	168	180	Right-handed alpha
Helix 33	AD6	E	181	183	Right-handed 310
Helix 34	AD7	E	187	191	Right-handed 310
Helix 35	AD8	E	192	197	Right-handed alpha
Helix 36	AD9	E	212	223	Right-handed alpha
Helix 37	AE1	E	243	247	Right-handed alpha
Helix 38	AE2	E	247	252	Right-handed alpha
Helix 39	AE3	E	261	266	Right-handed alpha
Helix 40	AE4	E	267	270	Right-handed 310
Helix 41	AE5	E	284	296	Right-handed alpha
Helix 42	AE6	E	315	323	Right-handed alpha
Helix 43	AE7	C	49	56	Right-handed alpha
Helix 44	AE8	C	57	70	Right-handed alpha
Helix 45	AE9	C	100	109	Right-handed alpha
Helix 46	AF1	C	112	133	Right-handed alpha
Helix 47	AF2	C	176	180	Right-handed 310
Helix 48	AF3	C	181	186	Right-handed alpha
Helix 49	AF4	C	192	210	Right-handed alpha
Helix 50	AF5	C	218	229	Right-handed alpha
Helix 51	AF6	C	238	249	Right-handed alpha
Helix 52	AF7	C	258	265	Right-handed alpha
Helix 53	AF8	C	290	295	Right-handed alpha
Helix 54	AF9	C	320	336	Right-handed alpha
Helix 55	AG1	C	337	342	Right-handed alpha
Helix 56	AG2	C	411	426	Right-handed alpha
Helix 57	AG3	C	534	549	Right-handed alpha
Helix 58	AG4	D	156	160	Right-handed 310
Helix 59	AG5	D	161	170	Right-handed alpha
Helix 60	AG6	D	207	212	Right-handed 310
Helix 61	AG7	D	213	217	Right-handed 310
Helix 62	AG8	D	232	236	Right-handed 310
Helix 63	AG9	F	28	36	Right-handed alpha
Helix 64	AH1	F	37	42	Right-handed 310
Helix 65	AH2	F	56	68	Right-handed alpha
Helix 66	AH3	F	88	99	Right-handed alpha
Helix 67	AH4	F	106	112	Right-handed alpha
Helix 68	AH5	F	113	122	Right-handed alpha
Helix 69	AH6	F	137	148	Right-handed alpha
Helix 70	AH7	F	168	180	Right-handed alpha
Helix 71	AH8	F	181	183	Right-handed 310
Helix 72	AH9	F	187	191	Right-handed 310
Helix 73	AI1	F	212	224	Right-handed alpha
Helix 74	AI2	F	246	252	Right-handed alpha
Helix 75	AI3	F	261	266	Right-handed alpha
Helix 76	AI4	F	267	270	Right-handed 310
Helix 77	AI5	F	284	296	Right-handed alpha
Helix 78	AI6	F	315	324	Right-handed alpha

There are 22 sheets in PDB entry 5ISO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	16	24	anti-parallel
Strand 3	A	29	35	anti-parallel
Strand 4	A	41	48	anti-parallel
Strand 5	A	88	94	anti-parallel
Strand 6	A	79	84	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	136	first strand
Strand 2	A	162	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	153	155	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	B	240	241	anti-parallel
Strand 3	B	248	257	anti-parallel
Strand 4	B	260	269	anti-parallel
Strand 5	E	45	52	parallel
Strand 6	E	71	76	parallel
Strand 7	E	81	87	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	408	first strand
Strand 2	A	465	472	anti-parallel
Strand 3	A	450	459	anti-parallel
Strand 4	A	437	443	anti-parallel
Strand 5	A	429	434	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	112	117	anti-parallel
Strand 3	B	106	107	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	91	95	anti-parallel
Strand 3	B	121	129	anti-parallel
Strand 4	B	132	134	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	91	95	anti-parallel
Strand 3	B	121	129	anti-parallel
Strand 4	B	149	155	anti-parallel
Strand 5	B	141	143	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	156	first strand
Strand 2	E	163	167	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	207	208	first strand
Strand 2	E	227	231	parallel
Strand 3	E	237	242	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	278	279	first strand
Strand 2	E	299	303	parallel
Strand 3	E	309	314	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	16	24	anti-parallel
Strand 3	C	29	35	anti-parallel
Strand 4	C	41	48	anti-parallel
Strand 5	C	88	94	anti-parallel
Strand 6	C	79	84	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	136	first strand
Strand 2	C	162	163	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	153	155	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	404	first strand
Strand 2	D	240	245	anti-parallel
Strand 3	D	248	257	anti-parallel
Strand 4	D	260	269	anti-parallel
Strand 5	F	45	52	parallel
Strand 6	F	71	76	parallel
Strand 7	F	81	87	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	406	408	first strand
Strand 2	C	464	471	anti-parallel
Strand 3	C	450	460	anti-parallel
Strand 4	C	437	443	anti-parallel
Strand 5	C	429	434	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	84	first strand
Strand 2	D	112	117	anti-parallel
Strand 3	D	106	107	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	104	first strand
Strand 2	D	91	95	anti-parallel
Strand 3	D	121	129	anti-parallel
Strand 4	D	132	134	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	104	first strand
Strand 2	D	91	95	anti-parallel
Strand 3	D	121	129	anti-parallel
Strand 4	D	150	155	anti-parallel
Strand 5	D	141	142	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	156	first strand
Strand 2	F	163	167	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	207	208	first strand
Strand 2	F	227	231	parallel
Strand 3	F	237	242	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	278	279	first strand
Strand 2	F	299	304	parallel
Strand 3	F	308	314	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ISO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ISO