Analysis of interatomic Contacts of Structural Units in PDB entry:
5IV9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IV9 entry

There are 2 chains in PDB entry 5IV9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LEU 758
B
 GLY 20ALA 169
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5IV9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
271 278Right-handed alpha
Helix 3
AA3
A
314 319Right-handed alpha
Helix 4
AA4
A
511 515Right-handed 310
Helix 5
AA5
A
633 641Right-handed alpha
Helix 6
AA6
B
30 33Right-handed 310
Helix 7
AA7
B
45 58Right-handed alpha
Helix 8
AA8
B
129 131Right-handed 310
Helix 9
AA9
B
132 157Right-handed alpha
Helix 10
AB1
B
158 166Right-handed alpha
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There are 6 sheets in PDB entry 5IV9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
42 53anti-parallel
Strand 3
A
56 66anti-parallel
Strand 4
A
86 89anti-parallel
Strand 5
A
93 97anti-parallel
Strand 6
A
108 118anti-parallel
Strand 7
A
124 133anti-parallel
Strand 8
A
138 147anti-parallel
Strand 9
A
157 166anti-parallel
Strand 10
A
171 180anti-parallel
Strand 11
A
185 195anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
42 53anti-parallel
Strand 3
A
56 66anti-parallel
Strand 4
A
79 84anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
56 66anti-parallel
Strand 3
A
79 84anti-parallel
Strand 4
A
99 103anti-parallel
Strand 5
A
108 118anti-parallel
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There are 19 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 228first strand
Strand 2
A
231 235anti-parallel
Strand 3
A
245 256anti-parallel
Strand 4
A
237 240anti-parallel
Strand 5
A
216 220anti-parallel
Strand 6
A
208 212anti-parallel
Strand 7
A
719 731anti-parallel
Strand 8
A
699 712anti-parallel
Strand 9
A
684 694anti-parallel
Strand 10
A
672 678anti-parallel
Strand 11
A
654 661anti-parallel
Strand 12
A
625 632anti-parallel
Strand 13
A
607 617anti-parallel
Strand 14
A
595 602anti-parallel
Strand 15
A
577 587anti-parallel
Strand 16
A
546 557anti-parallel
Strand 17
A
529 540anti-parallel
Strand 18
A
478 489anti-parallel
Strand 19
A
469 472anti-parallel
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There are 15 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 228first strand
Strand 2
A
231 235anti-parallel
Strand 3
A
245 256anti-parallel
Strand 4
A
259 268anti-parallel
Strand 5
A
286 297anti-parallel
Strand 6
A
301 310anti-parallel
Strand 7
A
330 340anti-parallel
Strand 8
A
344 355anti-parallel
Strand 9
A
364 379anti-parallel
Strand 10
A
382 395anti-parallel
Strand 11
A
402 417anti-parallel
Strand 12
A
421 437anti-parallel
Strand 13
A
453 467anti-parallel
Strand 14
A
478 489anti-parallel
Strand 15
A
469 472anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 62first strand
Strand 2
B
35 40parallel
Strand 3
B
74 89parallel
Strand 4
B
95 109anti-parallel
Strand 5
B
115 127anti-parallel
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