Analysis of interatomic Contacts of Structural Units in PDB entry:
5IVW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5IVW entry

There are 8 chains in PDB entry 5IVW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
V	ILE 244	ALA 718
W	ASP 15	GLN 726
0	ARG 54	ALA 241
1	MET 1	ASP 62
2	PRO 28	LYS 459
3	GLU 5	PHE 231
X	A 1	A 19
Y	T 1	T 20

There are 95 helices in PDB entry 5IVW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	V	282	286	Right-handed 310
Helix 2	AA2	V	287	294	Right-handed alpha
Helix 3	AA3	V	317	331	Right-handed alpha
Helix 4	AA4	V	332	335	Right-handed 310
Helix 5	AA5	V	345	358	Right-handed alpha
Helix 6	AA6	V	367	378	Right-handed alpha
Helix 7	AA7	V	379	381	Right-handed 310
Helix 8	AA8	V	443	446	Right-handed 310
Helix 9	AA9	V	451	457	Right-handed alpha
Helix 10	AB1	V	476	484	Right-handed alpha
Helix 11	AB2	V	493	497	Right-handed 310
Helix 12	AB3	V	517	525	Right-handed alpha
Helix 13	AB4	V	529	537	Right-handed alpha
Helix 14	AB5	V	537	554	Right-handed alpha
Helix 15	AB6	V	564	576	Right-handed alpha
Helix 16	AB7	V	585	599	Right-handed alpha
Helix 17	AB8	V	609	612	Right-handed 310
Helix 18	AB9	V	632	644	Right-handed alpha
Helix 19	AC1	V	667	671	Right-handed 310
Helix 20	AC2	V	672	683	Right-handed alpha
Helix 21	AC3	V	695	699	Right-handed 310
Helix 22	AC4	V	705	718	Right-handed alpha
Helix 23	AC5	W	18	24	Right-handed alpha
Helix 24	AC6	W	24	34	Right-handed alpha
Helix 25	AC7	W	47	58	Right-handed alpha
Helix 26	AC8	W	76	92	Right-handed alpha
Helix 27	AC9	W	111	116	Right-handed alpha
Helix 28	AD1	W	117	122	Right-handed alpha
Helix 29	AD2	W	129	147	Right-handed alpha
Helix 30	AD3	W	158	162	Right-handed 310
Helix 31	AD4	W	163	168	Right-handed alpha
Helix 32	AD5	W	168	174	Right-handed alpha
Helix 33	AD6	W	176	188	Right-handed alpha
Helix 34	AD7	W	190	199	Right-handed alpha
Helix 35	AD8	W	200	202	Right-handed 310
Helix 36	AD9	W	209	214	Right-handed alpha
Helix 37	AE1	W	214	226	Right-handed alpha
Helix 38	AE2	W	238	248	Right-handed alpha
Helix 39	AE3	W	252	266	Right-handed alpha
Helix 40	AE4	W	277	296	Right-handed alpha
Helix 41	AE5	W	308	317	Right-handed alpha
Helix 42	AE6	W	319	343	Right-handed alpha
Helix 43	AE7	W	395	408	Right-handed alpha
Helix 44	AE8	W	439	445	Right-handed alpha
Helix 45	AE9	W	446	448	Right-handed 310
Helix 46	AF1	W	465	472	Right-handed alpha
Helix 47	AF2	W	485	487	Right-handed 310
Helix 48	AF3	W	512	518	Right-handed alpha
Helix 49	AF4	W	518	531	Right-handed alpha
Helix 50	AF5	W	541	549	Right-handed alpha
Helix 51	AF6	W	573	587	Right-handed alpha
Helix 52	AF7	W	602	607	Right-handed 310
Helix 53	AF8	W	631	644	Right-handed alpha
Helix 54	AF9	W	646	652	Right-handed alpha
Helix 55	AG1	W	652	669	Right-handed alpha
Helix 56	AG2	W	683	689	Right-handed alpha
Helix 57	AG3	W	690	692	Right-handed 310
Helix 58	AG4	W	699	703	Right-handed 310
Helix 59	AG5	W	711	726	Right-handed alpha
Helix 60	AG6	0	68	73	Right-handed 310
Helix 61	AG7	0	80	99	Right-handed alpha
Helix 62	AG8	0	123	136	Right-handed alpha
Helix 63	AG9	0	144	158	Right-handed alpha
Helix 64	AH1	0	181	193	Right-handed alpha
Helix 65	AH2	0	205	216	Right-handed alpha
Helix 66	AH3	0	224	237	Right-handed alpha
Helix 67	AH4	1	17	26	Right-handed alpha
Helix 68	AH5	1	49	61	Right-handed alpha
Helix 69	AH6	2	29	45	Right-handed alpha
Helix 70	AH7	2	51	62	Right-handed alpha
Helix 71	AH8	2	77	84	Right-handed alpha
Helix 72	AH9	2	85	101	Right-handed alpha
Helix 73	AI1	2	118	129	Right-handed alpha
Helix 74	AI2	2	129	141	Right-handed alpha
Helix 75	AI3	2	160	177	Right-handed alpha
Helix 76	AI4	2	180	185	Right-handed alpha
Helix 77	AI5	2	187	199	Right-handed alpha
Helix 78	AI6	2	203	221	Right-handed alpha
Helix 79	AI7	2	228	233	Right-handed alpha
Helix 80	AI8	2	234	238	Right-handed 310
Helix 81	AI9	2	239	248	Right-handed alpha
Helix 82	AJ1	2	251	268	Right-handed alpha
Helix 83	AJ2	2	390	399	Right-handed alpha
Helix 84	AJ3	2	415	428	Right-handed alpha
Helix 85	AJ4	2	448	456	Right-handed alpha
Helix 86	AJ5	3	20	25	Right-handed alpha
Helix 87	AJ6	3	34	52	Right-handed alpha
Helix 88	AJ7	3	100	102	Right-handed 310
Helix 89	AJ8	3	103	119	Right-handed alpha
Helix 90	AJ9	3	124	128	Right-handed 310
Helix 91	AK1	3	132	154	Right-handed alpha
Helix 92	AK2	3	173	188	Right-handed alpha
Helix 93	AK3	3	200	211	Right-handed alpha
Helix 94	AK4	3	219	221	Right-handed 310
Helix 95	AK5	3	222	231	Right-handed alpha

There are 12 sheets in PDB entry 5IVW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	251	253	first strand
Strand 2	V	256	259	anti-parallel
Strand 3	V	277	280	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	406	409	first strand
Strand 2	V	361	365	parallel
Strand 3	V	437	441	parallel
Strand 4	V	462	467	parallel
Strand 5	V	337	339	parallel
Strand 6	V	487	489	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	389	390	first strand
Strand 2	V	401	402	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	579	580	first strand
Strand 2	V	604	607	parallel
Strand 3	V	558	561	parallel
Strand 4	V	622	625	parallel
Strand 5	V	657	664	parallel
Strand 6	V	505	512	parallel
Strand 7	V	687	690	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	38	41	first strand
Strand 2	W	476	479	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	106	108	first strand
Strand 2	W	204	208	parallel
Strand 3	W	69	74	parallel
Strand 4	W	229	234	parallel
Strand 5	W	452	457	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	249	251	first strand
Strand 2	W	432	436	anti-parallel
Strand 3	W	415	419	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	489	490	first strand
Strand 2	W	675	680	parallel
Strand 3	W	493	494	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	489	490	first strand
Strand 2	W	675	680	parallel
Strand 3	W	617	621	parallel
Strand 4	W	535	539	parallel
Strand 5	W	596	599	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	113	121	first strand
Strand 2	102	110	anti-parallel
Strand 3	59	66	parallel
Strand 4	164	171	parallel
Strand 5	194	201	parallel
Strand 6	218	222	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	35	37	first strand
Strand 2	1	43	46	anti-parallel
Strand 3	1	4	12	anti-parallel
Strand 4	2	405	411	anti-parallel
Strand 5	2	442	445	anti-parallel
Strand 6	2	434	435	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	67	71	first strand
Strand 2	3	55	62	anti-parallel
Strand 3	3	8	16	parallel
Strand 4	3	157	165	parallel
Strand 5	3	190	195	parallel
Strand 6	3	214	216	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5IVW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5IVW