Analysis of interatomic Contacts of Structural Units in PDB entry:
5J13

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J13 entry

There are 3 chains in PDB entry 5J13 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 28	LEU 156
B	SER 4	CYS 216
C	GLN 4	GLU 224

There are 14 helices in PDB entry 5J13. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	34	Right-handed 310
Helix 2	AA2	A	35	46	Right-handed alpha
Helix 3	AA3	A	46	55	Right-handed alpha
Helix 4	AA4	A	71	85	Right-handed alpha
Helix 5	AA5	A	96	110	Right-handed alpha
Helix 6	AA6	A	134	152	Right-handed alpha
Helix 7	AA7	B	29	33	Right-handed 310
Helix 8	AA8	B	81	85	Right-handed 310
Helix 9	AA9	B	126	131	Right-handed alpha
Helix 10	AB1	B	186	192	Right-handed alpha
Helix 11	AB2	B	212	216	Right-handed 310
Helix 12	AB3	C	31	35	Right-handed 310
Helix 13	AB4	C	90	94	Right-handed 310
Helix 14	AB5	C	213	216	Right-handed 310

There are 13 sheets in PDB entry 5J13. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	15	first strand
Strand 2	B	106	110	parallel
Strand 3	B	86	94	anti-parallel
Strand 4	B	36	40	anti-parallel
Strand 5	B	47	50	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	15	first strand
Strand 2	B	106	110	parallel
Strand 3	B	86	94	anti-parallel
Strand 4	B	99	102	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	26	first strand
Strand 2	B	72	77	anti-parallel
Strand 3	B	64	69	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	135	144	anti-parallel
Strand 3	B	177	185	anti-parallel
Strand 4	B	164	166	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	135	144	anti-parallel
Strand 3	B	177	185	anti-parallel
Strand 4	B	170	171	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	160	first strand
Strand 2	B	150	155	anti-parallel
Strand 3	B	196	202	anti-parallel
Strand 4	B	205	211	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	10	first strand
Strand 2	C	21	28	anti-parallel
Strand 3	C	81	86	anti-parallel
Strand 4	C	71	76	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	119	123	parallel
Strand 3	C	95	102	anti-parallel
Strand 4	C	36	42	anti-parallel
Strand 5	C	48	54	anti-parallel
Strand 6	C	61	63	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	119	123	parallel
Strand 3	C	95	102	anti-parallel
Strand 4	C	114	115	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	105	first strand
Strand 2	C	108	109	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	136	first strand
Strand 2	C	148	157	anti-parallel
Strand 3	C	188	196	anti-parallel
Strand 4	C	175	177	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	136	first strand
Strand 2	C	148	157	anti-parallel
Strand 3	C	188	196	anti-parallel
Strand 4	C	181	182	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	166	first strand
Strand 2	C	207	212	anti-parallel
Strand 3	C	217	222	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J13

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J13