Analysis of interatomic Contacts of Structural Units in PDB entry:
5J18


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J18 entry

There is 1 chain in PDB entry 5J18 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 151LEU 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 5J18. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
161 165Right-handed 310
Helix 2
AA2
A
176 188Right-handed alpha
Helix 3
AA3
A
191 193Right-handed 310
Helix 4
AA4
A
213 217Right-handed 310
Back to top of page

There is 1 sheet (AA1) in PDB entry 5J18.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
167 170first strand
Strand 2
A
156 160anti-parallel
Strand 3
A
222 226parallel
Strand 4
A
195 200anti-parallel
Strand 5
A
205 207anti-parallel
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il