Analysis of interatomic Contacts of Structural Units in PDB entry:
5J1K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J1K entry

There is 1 chain in PDB entry 5J1K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 120ASP 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5J1K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
125 136Right-handed alpha
Helix 2
AA2
A
152 154Right-handed 310
Helix 3
AA3
A
259 265Right-handed alpha
Helix 4
AA4
A
267 270Right-handed 310
Helix 5
AA5
A
271 276Right-handed alpha
Helix 6
AA6
A
282 301Right-handed alpha
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There are 3 sheets in PDB entry 5J1K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
168 171anti-parallel
Strand 3
A
246 253anti-parallel
Strand 4
A
209 216anti-parallel
Strand 5
A
199 204anti-parallel
Strand 6
A
184 190anti-parallel
Strand 7
A
226 227anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
168 171anti-parallel
Strand 3
A
246 253anti-parallel
Strand 4
A
256 257anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
232 235anti-parallel
Strand 3
A
218 219anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il