Analysis of interatomic Contacts of Structural Units in PDB entry:
5J26


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J26 entry

There are 2 chains in PDB entry 5J26 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
ALA 0GLY 75
A
VAL 1487GLY 1603
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5J26. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
22 35Right-handed alpha
Helix 2
AA2
B
37 41Right-handed 310
Helix 3
AA3
B
55 60Right-handed 310
Helix 4
AA4
A
1528 1530Right-handed 310
Helix 5
AA5
A
1589 1595Right-handed alpha
Helix 6
AA6
A
1596 1601Right-handed alpha
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There are 3 sheets in PDB entry 5J26. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
12 17first strand
Strand 2
B
1 6anti-parallel
Strand 3
B
68 73parallel
Strand 4
A
1552 1563anti-parallel
Strand 5
A
1568 1574anti-parallel
Strand 6
A
1577 1582anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
48 50first strand
Strand 2
B
43 45anti-parallel
Strand 3
B
68 73anti-parallel
Strand 4
A
1552 1563anti-parallel
Strand 5
A
1543 1547anti-parallel
Strand 6
A
1586 1587anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1524 1527first strand
Strand 2
A
1515 1519anti-parallel
Strand 3
A
1502 1508anti-parallel
Strand 4
A
1490 1493anti-parallel
Strand 5
A
1532 1533anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il