Analysis of interatomic Contacts of Structural Units in PDB entry:
5J2N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J2N entry

There are 6 chains in PDB entry 5J2N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 1	LYS 558
B	PRO 4	GLU 430
P	G 805	G 816
P	C 818	C 821
P	T 823	T 823
T	G 703	G 725

There are 34 helices in PDB entry 5J2N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	44	Right-handed alpha
Helix 2	AA2	A	77	84	Right-handed alpha
Helix 3	AA3	A	96	100	Right-handed 310
Helix 4	AA4	A	114	118	Right-handed 310
Helix 5	AA5	A	121	129	Right-handed 310
Helix 6	AA6	A	155	175	Right-handed alpha
Helix 7	AA7	A	194	212	Right-handed alpha
Helix 8	AA8	A	217	219	Right-handed 310
Helix 9	AA9	A	253	268	Right-handed alpha
Helix 10	AB1	A	276	283	Right-handed alpha
Helix 11	AB2	A	296	311	Right-handed alpha
Helix 12	AB3	A	363	383	Right-handed alpha
Helix 13	AB4	A	394	405	Right-handed alpha
Helix 14	AB5	A	473	488	Right-handed alpha
Helix 15	AB6	A	499	508	Right-handed alpha
Helix 16	AB7	A	515	528	Right-handed alpha
Helix 17	AB8	A	544	554	Right-handed alpha
Helix 18	AB9	B	27	44	Right-handed alpha
Helix 19	AC1	B	77	84	Right-handed alpha
Helix 20	AC2	B	99	103	Right-handed 310
Helix 21	AC3	B	112	118	Right-handed 310
Helix 22	AC4	B	121	129	Right-handed 310
Helix 23	AC5	B	134	138	Right-handed 310
Helix 24	AC6	B	154	160	Right-handed alpha
Helix 25	AC7	B	160	175	Right-handed alpha
Helix 26	AC8	B	196	211	Right-handed alpha
Helix 27	AC9	B	235	239	Right-handed 310
Helix 28	AD1	B	254	271	Right-handed alpha
Helix 29	AD2	B	276	282	Right-handed alpha
Helix 30	AD3	B	296	312	Right-handed alpha
Helix 31	AD4	B	363	383	Right-handed alpha
Helix 32	AD5	B	394	402	Right-handed alpha
Helix 33	AD6	B	403	405	Right-handed 310
Helix 34	AD7	B	420	427	Right-handed alpha

There are 12 sheets in PDB entry 5J2N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	49	first strand
Strand 2	A	142	146	anti-parallel
Strand 3	A	130	132	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	64	first strand
Strand 2	A	71	75	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	183	first strand
Strand 2	A	186	191	anti-parallel
Strand 3	A	105	110	anti-parallel
Strand 4	A	221	222	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	229	first strand
Strand 2	A	232	234	anti-parallel
Strand 3	A	239	241	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	354	first strand
Strand 2	A	336	344	anti-parallel
Strand 3	A	326	332	anti-parallel
Strand 4	A	388	391	parallel
Strand 5	A	414	416	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	512	513	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	470	first strand
Strand 2	A	452	459	anti-parallel
Strand 3	A	438	446	anti-parallel
Strand 4	A	492	497	parallel
Strand 5	A	530	535	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	49	first strand
Strand 2	B	142	146	anti-parallel
Strand 3	B	130	132	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	64	first strand
Strand 2	B	71	75	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	110	first strand
Strand 2	B	186	191	anti-parallel
Strand 3	B	179	183	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	292	293	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	355	first strand
Strand 2	B	336	344	anti-parallel
Strand 3	B	325	333	anti-parallel
Strand 4	B	387	391	parallel
Strand 5	B	414	416	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J2N

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J2N