Analysis of interatomic Contacts of Structural Units in PDB entry:
5J3H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J3H entry

There are 4 chains in PDB entry 5J3H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 22LEU 35
C
 GLN 1VAL 116
D
 ASP 1LYS 112
E
 GLY 5PRO 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5J3H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
22 34Right-handed alpha
Helix 2
AA2
C
63 65Right-handed 310
Helix 3
AA3
C
73 75Right-handed 310
Helix 4
AA4
C
86 90Right-handed 310
Helix 5
AA5
D
85 89Right-handed 310
Helix 6
AA6
E
17 24Right-handed 310
Helix 7
AA7
E
42 48Right-handed alpha
Helix 8
AA8
E
132 136Right-handed 310
Helix 9
AA9
E
193 197Right-handed 310
Helix 10
AB1
E
255 264Right-handed alpha
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There are 12 sheets in PDB entry 5J3H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
77 82anti-parallel
Strand 4
C
67 72anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 59first strand
Strand 2
C
46 51anti-parallel
Strand 3
C
33 39anti-parallel
Strand 4
C
91 98anti-parallel
Strand 5
C
112 114anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
76 81anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 13first strand
Strand 2
D
107 111parallel
Strand 3
D
90 96anti-parallel
Strand 4
D
39 44anti-parallel
Strand 5
D
51 55anti-parallel
Strand 6
D
59 60anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 13first strand
Strand 2
D
107 111parallel
Strand 3
D
90 96anti-parallel
Strand 4
D
102 103anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 14first strand
Strand 2
E
26 38parallel
Strand 3
E
56 57parallel
Strand 4
E
81 82parallel
Strand 5
E
111 112parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 14first strand
Strand 2
E
26 38parallel
Strand 3
E
61 66parallel
Strand 4
E
91 96parallel
Strand 5
E
116 120parallel
Strand 6
E
144 146parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
171 172first strand
Strand 2
E
179 180anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
182 184first strand
Strand 2
E
187 188anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
231 233first strand
Strand 2
E
236 238anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
252 254first strand
Strand 2
E
246 248anti-parallel
Strand 3
E
283 285parallel
Strand 4
E
278 280anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
293 294first strand
Strand 2
E
301 302anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il